LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi11g2748	ATGGATTTACGTAAAGTCATGAATGGGTTGAAACTAGTGGTGCTAGTGGTGGTTGTGCAGATTGCATTTGCTACTGTCATTGTGCTCTACAAGCTCGCCATTAACGATGGAATGAGCATAAGGGTTGCCACTACCTATCGCCTCCTCTTCCCATCTGCTTTCACTGTTCCTCTTGCTCTTGTTCTTGAGAGGAACAAGAGACCAGAGCTGACTTGGAGGGTGCTTTTTATGGCATTTCTTTGTGGCTTGTTTGGGGGAAGTTTATTTCAAAACCTTTACTCTGAGGCTCTAGCTTTGACATCGGCAACATTTGTTTCGGCTATCTATAATCTTATTCCAACCATCACCTTCATCATGGCCATCTCCTGCGGCTTTGAAAGATTGAATCTGGGAGCAGCAGGAGGGAAGGCCAAGGTGTTAGGTACTATAATAGGGATTGATGGGGCAATGCTGCTTACCTTCTTCAAAGGGGTAGAAATTGACATTTGGTCCTTCTACATTGATCTGTATAAAATCACAATTGCATTTGCTTCTGTTAATGTTCTCTACAAGGTTGCCTTTAACCGTGGAATGAGTGTCAGGGTTCTCACTGCCTATCGCCTCATTTTTGCCTCTGCTTTCACTCTTCCTCTTGCCCTTTTTTTTGAAAGGAACAAGAGACCGAAGATGACATGGAGGGTGCTTGTTATGGCATTTCTTTGTGGCCTATTTGGGGGAAGTTTGTCTCAAAACCTTTACTTTGAAGCCCTGAATTTGATATCGGCAACGTTTGCTTCCACTGTCTATAACCTCATACCGGCAGCCACTTTTATCTTGGCCATCACTTTTGGTTTTGAAAGATTAAATTTCCAAACGGGAGCAGGGAAGGCCAAGGTTTTTGGAACAATAATAGGAATTGGAGGGGCAATGATTATAACCTTTGTGAAAGTTGTAGAAATTGACATATGGTCCTTCCACGTTAAACTTTTGCATCATAACGGAAACGCTGAAGCATCACATGATAGAAAATTTCTGGGTATTCTCTGTGGTATTGCAAACTGCTTCTGTTTTGCACTATGGCTCATCATTCAGGCTAAGATGAGTGAAGAATACCCAACCCCTTATTCAAGCACTGCTTTGATGTCTATAATGGGAGCAATACAAGCCACAGTGCTTGCACTTTGTGTTCAGAAGGATTGGAGCCAATGGAGATTGGGTTGGAATGTTAGGCTTCTAACTGCTGCTTATTCGGGAATTGTGGCCTCTGGAATAATGGTTATTGTGATTGCATGGTGTGTAAGGACGAAAGGCCCACTGTTTGCCTCTGTTTTCAACCCTCTCATGCTTGTGCTTGTAGCCATTGCTGGTTCTTTGATGTTGGATGAGAAACTACACTTGGGAAGTGTGATTGGAGCAGTGCTGGTTGTGTGTGGCTTGTACCTGGTGTTGTGGGGAAAGAGCAAAGAAATGAAAAGCATGACTCAGTTAGTGCCATCTGAAATCACCAAAGAATCTGAAGCAATTGAGGTTGTTGTGGATCATGATGAAAGGGATCCACCCCAGCAGCCACAGTCAAACCAAACCGGTAGTAGTAGCAATATTTAA	1584	0.4324	MDLRKVMNGLKLVVLVVVVQIAFATVIVLYKLAINDGMSIRVATTYRLLFPSAFTVPLALVLERNKRPELTWRVLFMAFLCGLFGGSLFQNLYSEALALTSATFVSAIYNLIPTITFIMAISCGFERLNLGAAGGKAKVLGTIIGIDGAMLLTFFKGVEIDIWSFYIDLYKITIAFASVNVLYKVAFNRGMSVRVLTAYRLIFASAFTLPLALFFERNKRPKMTWRVLVMAFLCGLFGGSLSQNLYFEALNLISATFASTVYNLIPAATFILAITFGFERLNFQTGAGKAKVFGTIIGIGGAMIITFVKVVEIDIWSFHVKLLHHNGNAEASHDRKFLGILCGIANCFCFALWLIIQAKMSEEYPTPYSSTALMSIMGAIQATVLALCVQKDWSQWRLGWNVRLLTAAYSGIVASGIMVIVIAWCVRTKGPLFASVFNPLMLVLVAIAGSLMLDEKLHLGSVIGAVLVVCGLYLVLWGKSKEMKSMTQLVPSEITKESEAIEVVVDHDERDPPQQPQSNQTGSSSNI	527

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi11g2748	527	MobiDBLite	consensus disorder prediction	505	527	-	-
	Glsi11g2748	527	SUPERFAMILY	Multidrug resistance efflux transporter EmrE	393	481	-	-
	Glsi11g2748	527	SUPERFAMILY	Multidrug resistance efflux transporter EmrE	199	298	-	-
	Glsi11g2748	527	SUPERFAMILY	Multidrug resistance efflux transporter EmrE	46	152	-	-
	Glsi11g2748	527	PANTHER	WAT1-RELATED PROTEIN	173	488	IPR030184	GO:0016020\|GO:0022857
	Glsi11g2748	527	Pfam	EamA-like transporter family	173	306	IPR000620	GO:0016020
	Glsi11g2748	527	Pfam	EamA-like transporter family	13	152	IPR000620	GO:0016020
	Glsi11g2748	527	Pfam	EamA-like transporter family	338	476	IPR000620	GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi11g2748	Glsi-ChrGlsi11	20613906	20620948	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi11g2748	176	520	Nodulin-like Gene Family	AT1G25270	42.651	7.05e-96	293