Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2739 ATGGAATATAAAGCTCATCTGATGAACTCTCAGTCTTTCTTCTACAACTTTAAGCTGCTGCTTTATCGCATTGCTTCTCTTCGATTCATTCTTTCCCTGCAGGCCAGTGTGTTCGAGTTCAGGTCGGGGAAGATGGCTGATGGAGAGGACATTCAACCTCTTGTTGTTGACAATGGAACTGGAATGGTCAAGGCTGGTTTTGCTGGTGATGATGCCCCTAGGGCTGTATTCCCCAGTATTGTTGGGAGGCCTCGCCACACTGGTGTTATGGTTGGGATGGGTCAGAAGGATGCATATGTGGGTGATGAAGCCCAGTCGAAAAGAGGTATCCTCACCTTGAAGTACCCTATAGAGCATGGCATAGTCAGTAATTGGGATGATATGGAGAAGATTTGGCATCACACATTCTACAATGAGCTTCGTGTTGCCCCGGAAGAACACCCAGTACTTCTTACTGAGGCACCACTCAACCCCAAGGCCAACAGAGAAAAGATGACCCAAATCATGTTTGAGACTTTCAATGTGCCTGCTATGTATGTTGCCATCCAGGCTGTTCTGTCTCTGTATGCCAGTGGACGGACAACAGGTATTGTCCTCGATTCTGGGGATGGTGTGAGCCACACAGTGCCCATTTATGAAGGGTATGCTCTCCCTCATGCAATCCTTCGGTTGGATCTTGCTGGACGTGACTTAACAGATTACTTAATGAAAATTCTTACTGAGAGAGGGTACTCTTTCACCACATCTGCTGAACGTGAAATTGTACGTGACATGAAGGAGAAACTAGCATATGTGGCCATTGATTTTGAGCAAGAATTGGACACTTCCAAGAGTAGTTCTGCAGTGGAGAAGAGCTATGAGTTACCCGATGGACAGGTTATCACTATTGGTGCTGAGAGATTCCGATGCCCAGAAGTACTCTTCCAGCCTTCTCTAGTTGGTATGGAAGCAGCTGGAATTCATGAAACTACCTACAACTCGATCATGAAATGTGATGTTGATATTAGGAAGGATCTATATGGAAATATTGTGCTCAGTGGTGGCTCAACTATGTTCCCTGGAATTGCTGATCGAATGAGCAAGGAAATTACTGCCCTTGCTCCAAGCAGCATGAAAATAAAGGTAGTTGCACCTCCTGAGAGGAAGTACAGTGTCTGGATTGGTGGGTCTATTCTGGCATCACTTAGCACCTTCCAACAGATGTGGATCTCCAAGGGTGAATACGATGAATCTGGTCCAGCAATTGTTCACCGTAAGTGCTTTTGA 1266 0.4581 MEYKAHLMNSQSFFYNFKLLLYRIASLRFILSLQASVFEFRSGKMADGEDIQPLVVDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTSAEREIVRDMKEKLAYVAIDFEQELDTSKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2739 421 Gene3D - 54 415 - -
Glsi11g2739 421 FunFam Actin, alpha skeletal muscle 47 207 - -
Glsi11g2739 421 Gene3D - 184 384 - -
Glsi11g2739 421 Gene3D Actin; Chain A, domain 4 226 317 - -
Glsi11g2739 421 ProSitePatterns Actins signature 2. 402 410 IPR004001 -
Glsi11g2739 421 SUPERFAMILY Actin-like ATPase domain 193 421 IPR043129 -
Glsi11g2739 421 FunFam Putative actin-related protein 5 385 413 - -
Glsi11g2739 421 SMART actin_3 51 421 IPR004000 -
Glsi11g2739 421 Pfam Actin 49 421 IPR004000 -
Glsi11g2739 421 ProSitePatterns Actins signature 1. 99 109 IPR004001 -
Glsi11g2739 421 CDD NBD_sugar-kinase_HSP70_actin 54 227 - -
Glsi11g2739 421 ProSitePatterns Actins and actin-related proteins signature. 150 162 IPR020902 -
Glsi11g2739 421 SUPERFAMILY Actin-like ATPase domain 50 199 IPR043129 -
Glsi11g2739 421 PRINTS Actin signature 161 174 IPR004000 -
Glsi11g2739 421 PRINTS Actin signature 282 298 IPR004000 -
Glsi11g2739 421 PRINTS Actin signature 72 81 IPR004000 -
Glsi11g2739 421 PRINTS Actin signature 95 106 IPR004000 -
Glsi11g2739 421 PRINTS Actin signature 186 205 IPR004000 -
Glsi11g2739 421 PRINTS Actin signature 107 129 IPR004000 -
Glsi11g2739 421 FunFam Actin, muscle 226 317 - -
Glsi11g2739 421 FunFam Major actin 305 384 - -
Glsi11g2739 421 PANTHER ACTIN 53 414 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2739 Glsi-ChrGlsi11 20470289 20473049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2739 45 421 Cytoskeleton Gene Families AT3G12110 95.491 0.0 761