Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2736 ATGGTTGGAAGTGTTGATGTTTTGGCTGATAAGATGAGTATCCTTGAAGCAGTTGAACCATTGCCTGAGGATTTTGATCCAACGGTTTTGATTAAAGATACTGTGCCACCGGTAGTTGAAAACAATGGTAGTTTCAGTTCAGAGGCTCAGATCAGTAGAGATAAACATAAGAGAGAGATAGCACTAGGAAGGAATGTTCATACTTCTTGCCTGGAAGTTACAGAGCCAGATGATGACGACGAGGTTACTGGGGACAGGGAAGCTTATATGGCAAGTGTGTTGGCTAAATACAGAAAATCTCTGATGGAAAGGACGAAGCATCATTTAGGTTACCCTTATAATTTGGATTTCGACTATGGAGCACTTGCTCAGCTGCAGCACTTTTCAATAAACAACCTGGGAGATCCATTTATTGAAAGCAACTATGGTGTCCACTCCCGGCAGTTTGAAGTAGGTGTTTTGGATTGGTTTGCCCGATTGTGGGAACTGGAGAAAAATGAGTACTGGGGCTATATAACAAACTGTGGCACAGAAGGCAATCTCCATGGAATCCTAGTTGGGAGAGAAGTTTTCCCAGATGGAATTCTGTATGCCTCTCGGGAAACACATTATTCTATTTTCAAAGCTGCTCGTATGTACAGAATGGAATGTGTGAAGGTTGATACTCTTTGTTCTGGGGAGATTGATTGTGATGATTTCAAGGCCAAGATTCTTTGTAACAAGGACAAGCCAGCAATTGTAAATGTGAATATAGGCACAACTGTCAAAGGAGCTGTGGATGATCTTGATCTAGTCATAAAGAAACTTGAAGAAGCAGGATTTTCACATGATCGATTCTACATCCATTGTGATGGGGCTTTGTTTGGTCTTATGATGCCTTTTGTCAAACGTGCTCCAAAAGTCTCTTTCAAGAAGCCTATTGGTAGCGTCAGTGTTTCTGGCCACAAATTTGTGGGATGCCCCATGCCTTGTGGTGTGCAGATAACAAGATTGGAGCATATTAATGCTCTCTCCAGGAATGTGGAGTACCTAGCTTCTAGGGATGCTACAATCATGGGCAGTCGGAACGGTCATGCCCCCATATTCCTCTGGTACACCCTAAACCGGAAAGGGTACAAAGGTTTCCAGAAAGAAGTACAGAAATGCTTGCGGAATGCACATTACTTGAAGGACCGTCTTAGAGAAGCTGGGATTGGTGCAATGCTCAATGAGCTGAGCAGCACAGTTGTATTTGAGCGGCCACACGATGAGGAATTTGTTCGCAGGTGGCAATTGGCATGCCAGGGGAACATCGCTCATGTTGTGGTGATGCCAAACATCACCATTGAGAAGCTTGACCAATTTCTGGATGAGCTTGAGCAGAAGCGTGCCACGTGGTTTCAAGATGGTAAATCTCAACCTCACTGTATTGCATCTGATGTAGGTGAAAACAATTGTCTTTGTGCGAAGCACAAGTAA 1458 0.4362 MVGSVDVLADKMSILEAVEPLPEDFDPTVLIKDTVPPVVENNGSFSSEAQISRDKHKREIALGRNVHTSCLEVTEPDDDDEVTGDREAYMASVLAKYRKSLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRETHYSIFKAARMYRMECVKVDTLCSGEIDCDDFKAKILCNKDKPAIVNVNIGTTVKGAVDDLDLVIKKLEEAGFSHDRFYIHCDGALFGLMMPFVKRAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRLEHINALSRNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLREAGIGAMLNELSSTVVFERPHDEEFVRRWQLACQGNIAHVVVMPNITIEKLDQFLDELEQKRATWFQDGKSQPHCIASDVGENNCLCAKHK 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2736 485 Gene3D - 124 367 IPR015421 GO:0003824
Glsi11g2736 485 SUPERFAMILY PLP-dependent transferases 104 455 IPR015424 -
Glsi11g2736 485 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 309 330 IPR021115 GO:0016831
Glsi11g2736 485 PANTHER - 49 485 - -
Glsi11g2736 485 Pfam Pyridoxal-dependent decarboxylase conserved domain 195 407 IPR002129 GO:0016830|GO:0019752|GO:0030170
Glsi11g2736 485 Gene3D Aspartate Aminotransferase, domain 1 368 457 IPR015422 GO:0003824
Glsi11g2736 485 FunFam Serine decarboxylase 1 124 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2736 Glsi-ChrGlsi11 20449076 20451250 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2736 208 391 Calmodulin-binding Proteins AT1G65960 27.461 9.08e-11 61.6