Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2731 ATGGCAGGCTGGCAGCTGTCAACTTTAAAGATCAGGAGCTTCGCTCCATCTGAGCTATTGAAATCTTTGTTTAAAATGTCAGAAGTGGATGAGCACCGCTGCTTCATTGGTGGCCTTTCATGGTCAACATCTGATAGAAAGTTAAAGGATACATTTGAAAAGTTTGGCAAGCTTCTTGAGGCAAAGGTTGTTGTTGACAAATTCTCCGGGCGTTCTCGCGGTTTTGGATTTGTCACATTTGATGACAAGAAAGCAATGGAAGATGCTATTGATGCTATGAATGGGATGGATTTAGATGGTCGAACTATCACTGTTGATAAAGCTCAGCCTCAACAAGGATCTACTAGAGATGATGGTGATCGCTACCGTGAACGGGGTCGTGATCGTGATCGTGATCGTAACCGAGATTATGGAGGCGGTCGAGGATCTAATGGAGGCGAATGCTTTAAATGTGGTAAACCTGGTCATTTTGCTAGAGAGTGTCCTAGTGAAGGGGCAAGAGGGGGTAAGTATAGTGGCAGGGAAAGTAGATACAGTGGCAGCAGTGGTGGTGGTGGTCACTATGGTCCTGATAGGAGTGCAGATCGTTCTTCTGGTGGGCGCAACAGGGATTCTGGTAGTCATGGAGATTCTGGAGGTGATCGGTACTATCGTGATCGTTCTGGACCTTATGAGCGACGAGGATCAGGAGGCTTTCGTTCTGGATAG 708 0.4661 MAGWQLSTLKIRSFAPSELLKSLFKMSEVDEHRCFIGGLSWSTSDRKLKDTFEKFGKLLEAKVVVDKFSGRSRGFGFVTFDDKKAMEDAIDAMNGMDLDGRTITVDKAQPQQGSTRDDGDRYRERGRDRDRDRNRDYGGGRGSNGGECFKCGKPGHFARECPSEGARGGKYSGRESRYSGSSGGGGHYGPDRSADRSSGGRNRDSGSHGDSGGDRYYRDRSGPYERRGSGGFRSG 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2731 235 Gene3D - 22 143 IPR012677 -
Glsi11g2731 235 Gene3D - 144 204 - -
Glsi11g2731 235 ProSiteProfiles Zinc finger CCHC-type profile. 148 163 IPR001878 GO:0003676|GO:0008270
Glsi11g2731 235 SMART c2hcfinal6 147 163 IPR001878 GO:0003676|GO:0008270
Glsi11g2731 235 Pfam Zinc knuckle 147 163 IPR001878 GO:0003676|GO:0008270
Glsi11g2731 235 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Glsi11g2731 235 SUPERFAMILY Retrovirus zinc finger-like domains 130 167 IPR036875 GO:0003676|GO:0008270
Glsi11g2731 235 SUPERFAMILY RNA-binding domain, RBD 26 142 IPR035979 GO:0003676
Glsi11g2731 235 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 104 IPR000504 GO:0003723
Glsi11g2731 235 FunFam Glycine-rich RNA-binding protein RZ1A 26 143 - -
Glsi11g2731 235 CDD RRM2_NsCP33_like 33 108 - -
Glsi11g2731 235 MobiDBLite consensus disorder prediction 101 235 - -
Glsi11g2731 235 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 26 231 - -
Glsi11g2731 235 MobiDBLite consensus disorder prediction 194 226 - -
Glsi11g2731 235 SMART rrm1_1 33 106 IPR000504 GO:0003723
Glsi11g2731 235 MobiDBLite consensus disorder prediction 113 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2731 Glsi-ChrGlsi11 20427544 20429191 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2731 34 109 Eukaryotic Initiation Factors Gene Family AT1G49760 36.842 6.40e-07 47.8