Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2721 ATGAAGCCTTTGACTCTCCCAAGGCTCATATTGCTTCTTCACTTTACTTTATACTCACTATGGTTTCAACCTTGCAGTGCTGCTTCTACATTAGGAAACCAGACCGATTATTTGGCCTTACTCAAATTCAAGGAATCAATATCTGATGACCCATACAAAATTTTAACCTCTTGGAACGGTTCTATTCACTTCTGCAACTGGCATGGAATCACTTGTGGCCGTAGGCACCAAAGAGTTACAGAGTTGAACTTAGGTGGGTATCTCTTGCATGGATTTTTATCACCTCACATTGGCAATCTCTCCTTTCTGAGAAGCATCATACTCCAGAACAATAGCTTCCACGGGGAAATCCCACAAGAGTTGGGTCGTTTATTTCGACTGAAGATGCTTTCTCTTGTCAATAATACATTGGTTGGCGAAATTCCTATCAACATCACAAGTTGCTCTGAACTCAGGCACTTAGATTTTACTAGAAATAATCTTACTGGCAGAATACCAACGGAGATTGGTTTTCTCAAGAAGCTTGAAGAATTACATCTTTCAATAAATAGTTTATCAGGACGAATCCCAACTTCTATGTGGAATCTTTCTTCCCTTCGAATTCTTTCTATCGAATATAATCACTTGGAGGGAAATATACAAGAAGAAATAGGCCTTCTGAAAAATCTGACACAATTGAAAGTAGCTATCAACAAATTTTCTGGTATGCTTCCTCGTTCTCTTTACAATATGTCATCTCTCACTGAAATTGTAACAGTACTCAATCAATTTAATGGCTCACTCCCAGCCAACATGTTCCTTACCCTCCCTAATCTCCAACTGTTGGAAATTGGAGGAAATCAAATCTCAGGTCCTATCCCATCTTCCATCCCAAATGCATCTATGCTTCAAATACTTGAAATCTCTCATAACCATTTTTTAGGACAAGTTCCAAGTCTTGGAAAGCTGCAATACCTCTCCATTCTACTAATAGGTTTTAATAACCTGGGTAGTAATTCATCTAAAGACTTGAAGTTCTTATCATCTCTGGTAAACTGTAGTAACTTAAAAATTCTAGATATGCCTGCTAATAATTTTGGAGGTCAGTTACCTAATACTATAGGCAATTTGTCCACCCAACTCACTAACCTATACCTTGGTAGTAATAAGATATTTGGGAAAATTCCTGCAACATTAGGAAATCTCATAAACTTGATCATCTTCGCGACGGACAATAACTATTTTACTGAGGTCATCCCAGCTACCTTTGGAAAGTTTCAAAATATGCAAAGATTATATCTAATGGGAAACAAACTATCGGGAGAAATACCATCTGTCATAGGCAACCTTAGTCAATTATCGCTATTGGATTTGTCACGTAATATGTTAGAAGGACATATTCCTCCCAGTGTTGGGAAATGCCGAAGTTTACAATACCTAGACCTCTCACAAAACAATCTTACTGGAGATATACCAGTAGAGGTCATTGGTCTTTCGTCTTTATCAATCCTACTAAACTTGTCACATAACTCATTCAATGGCAATCTCCATGCCGAGGTGGGCAAGTTAAAAAATGTTGGTAAGTTAGACATCTCTCAAAATCATCTCTCCGGGCAGATTCCTGGAGCCATTGGAGACTGCATAAGCTTGGAGTACCTCTATTTACAAGGGAATTCCTTCCAAGGAACCATTCCTTCATCTTTGGCTTCATTGAAAGGTCTTCGGTATGTAGATCTGTCACGAAATAACTTGTCCGGATCAATTCCAAAAGGCTTGCAGGATATTTTTGTTTTGACATACTTGAATGCTTCTTTTAACATATTGGACGGTGAGGTACCAAGGAAAGGTGTTTTTGGCAATGCAAGTGCAATATCAGTAGCTGGCAATAGTAAGCTTTGTGGAGGTATCTTAGAGCTGAAGCTACCACCATGCCCTTCGAAAGTTATGAAAAAAAGAAAACACCACAGTTTTAAGTTGGTGACAGTGATAAGTTGTGTGGTTGCTTTTTTTCTTCTATTGTCATCGATTGTTGCCATTTATCATATGAGAAAAAGAAACAGGAAATCATCTTCAAAGTCACCAACAATTGACCTTCTTTCCAAAGTGTCATACCAAAGTTTACACAATGCCACTGACGGGTTCTCAGCCAACAACTTGATAGGATCTGGAAGTTTTGGCTCTGTGTATAAGGGAAGTATCGACTCTCAAGAAGTTGTTGCAATAAAGGTACTCAATCTTCACATCAAGGGAGCTCACAAGAGTTTCGTGGCTGAATGTAATGCACTTAGAAATATAAGGCAACGAAATCTAGTAAAGGTTTTAACATGTTGCTCCAGCACAGATTACAAGGGACAGGAATTTAAAGCTCTAGTTTTTGAGTACATGGCAAATGGAAGCTTAGAAAAATGGTTGCATCCAATTACGAAAAATGCAAATCATCCAAGAACTTTTCTCCTTGATCAGATATTAACTATTGTTACGGATGTTGCTTCTGCATTACATTATCTTCACTACGAATGCGAGCAACCCATTGTTCATTGTGATTTAAAGCCGAGCAATGTCCTTCTTGATGGCGACATGGTTGCTCATGTGAGTGATTTTGGACTAGCAAGACTGCTTCCTATAATTAATGGCATCTCTAATAAGCAAAGCAGCACATCTGGAATAAAGGGTACTATTGGCTATGCTCCTCAAGAATATGGAATGGGTTTTGCGGTGTCAATAGAGGGTGACATGTACAGTTTTGGGATTCTTGTTTTGGAAATGTTAACTGGAAGAAGACCAACAGAAGATAAGTTCAAAGACGGTCAAAATCTCCACAACTACGTGGAAAGTGCATTTCCTAATAATCTTTTGCAAATTGTGAACCCAGCTATTCTCCCTAGCGAAACAGAACAGATAGTGGAAGCATCAAGAGAACAATGGGAGAACACGACACTGATACATCCTAATATAGAGAAATGCTTATTTTCTCTATTTAGGATTGGACTTTCTTGTTCGGTGGAAACACCAAAAGAAAGAATGAGTATGGTGGAAGTCACTAGGGAATTAAATTTAATAAGAAATTCCTTTCTTTCTAGTGGGTTCAGTAGAGTCTAA 3078 0.3834 MKPLTLPRLILLLHFTLYSLWFQPCSAASTLGNQTDYLALLKFKESISDDPYKILTSWNGSIHFCNWHGITCGRRHQRVTELNLGGYLLHGFLSPHIGNLSFLRSIILQNNSFHGEIPQELGRLFRLKMLSLVNNTLVGEIPINITSCSELRHLDFTRNNLTGRIPTEIGFLKKLEELHLSINSLSGRIPTSMWNLSSLRILSIEYNHLEGNIQEEIGLLKNLTQLKVAINKFSGMLPRSLYNMSSLTEIVTVLNQFNGSLPANMFLTLPNLQLLEIGGNQISGPIPSSIPNASMLQILEISHNHFLGQVPSLGKLQYLSILLIGFNNLGSNSSKDLKFLSSLVNCSNLKILDMPANNFGGQLPNTIGNLSTQLTNLYLGSNKIFGKIPATLGNLINLIIFATDNNYFTEVIPATFGKFQNMQRLYLMGNKLSGEIPSVIGNLSQLSLLDLSRNMLEGHIPPSVGKCRSLQYLDLSQNNLTGDIPVEVIGLSSLSILLNLSHNSFNGNLHAEVGKLKNVGKLDISQNHLSGQIPGAIGDCISLEYLYLQGNSFQGTIPSSLASLKGLRYVDLSRNNLSGSIPKGLQDIFVLTYLNASFNILDGEVPRKGVFGNASAISVAGNSKLCGGILELKLPPCPSKVMKKRKHHSFKLVTVISCVVAFFLLLSSIVAIYHMRKRNRKSSSKSPTIDLLSKVSYQSLHNATDGFSANNLIGSGSFGSVYKGSIDSQEVVAIKVLNLHIKGAHKSFVAECNALRNIRQRNLVKVLTCCSSTDYKGQEFKALVFEYMANGSLEKWLHPITKNANHPRTFLLDQILTIVTDVASALHYLHYECEQPIVHCDLKPSNVLLDGDMVAHVSDFGLARLLPIINGISNKQSSTSGIKGTIGYAPQEYGMGFAVSIEGDMYSFGILVLEMLTGRRPTEDKFKDGQNLHNYVESAFPNNLLQIVNPAILPSETEQIVEASREQWENTTLIHPNIEKCLFSLFRIGLSCSVETPKERMSMVEVTRELNLIRNSFLSSGFSRV 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2721 1025 Gene3D Ribonuclease Inhibitor 331 638 IPR032675 -
Glsi11g2721 1025 SMART LRR_typ_2 172 196 IPR003591 -
Glsi11g2721 1025 SMART LRR_typ_2 220 243 IPR003591 -
Glsi11g2721 1025 SMART LRR_typ_2 269 293 IPR003591 -
Glsi11g2721 1025 SMART LRR_typ_2 516 540 IPR003591 -
Glsi11g2721 1025 SMART LRR_typ_2 564 587 IPR003591 -
Glsi11g2721 1025 SMART LRR_typ_2 443 467 IPR003591 -
Glsi11g2721 1025 SMART LRR_typ_2 100 124 IPR003591 -
Glsi11g2721 1025 FunFam LRR receptor-like serine/threonine-protein kinase EFR 335 643 - -
Glsi11g2721 1025 Pfam Leucine rich repeat N-terminal domain 34 72 IPR013210 -
Glsi11g2721 1025 SUPERFAMILY Protein kinase-like (PK-like) 680 1010 IPR011009 -
Glsi11g2721 1025 ProSitePatterns Protein kinases ATP-binding region signature. 713 735 IPR017441 GO:0005524
Glsi11g2721 1025 SUPERFAMILY L domain-like 34 329 - -
Glsi11g2721 1025 ProSiteProfiles Protein kinase domain profile. 707 1018 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g2721 1025 Pfam Leucine rich repeat 150 209 IPR001611 GO:0005515
Glsi11g2721 1025 Pfam Leucine rich repeat 404 456 IPR001611 GO:0005515
Glsi11g2721 1025 Pfam Leucine rich repeat 542 599 IPR001611 GO:0005515
Glsi11g2721 1025 SMART serkin_6 707 1018 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g2721 1025 PANTHER OS04G0122200 PROTEIN 219 1016 - -
Glsi11g2721 1025 Gene3D Phosphorylase Kinase; domain 1 667 787 - -
Glsi11g2721 1025 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 214 310 - -
Glsi11g2721 1025 Pfam Protein kinase domain 709 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g2721 1025 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 788 1021 - -
Glsi11g2721 1025 Gene3D Transferase(Phosphotransferase) domain 1 788 1020 - -
Glsi11g2721 1025 Gene3D Ribonuclease Inhibitor 33 317 IPR032675 -
Glsi11g2721 1025 SUPERFAMILY L domain-like 373 627 - -
Glsi11g2721 1025 FunFam LRR receptor-like serine/threonine-protein kinase EFR 677 787 - -
Glsi11g2721 1025 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 33 195 - -
Glsi11g2721 1025 ProSitePatterns Serine/Threonine protein kinases active-site signature. 837 849 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2721 Glsi-ChrGlsi11 20266599 20269793 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2721 33 1020 Receptor kinase-like Gene Family AT3G47570 45.000 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Glsi11g2721 Pkinase 3.8e-37 CL0016