Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2712 ATGGAGGGAGTGATTTCGTTTTTCATGTGTTCTTTTCTTCTTTGGGCAATTTTAGTGTTTGATTTGGTGCTAAAGGCTTCCGGCAATGTGGAAGGCGATGCCCTGAGTGCATTGAAGACCAGCATGACTGATCCTAACAATGTTCTTCAAAGTTGGGATTCTACCCTTGTCAATCCTTGCACATGGTTTCATGTAACATGCAATAGTGATAATAGTGTGACTCGTGTTGATCTTGGAAATGCTAACCTTACGGGTCTATTAGTTCCACAGCTTGGTCAGCTCCCAAATTTGCAGTACTTGGAACTTTATAGTAATCATATAAGTGGAAAAATTCCAGACGAGCTTGGAAATTTGACCAACTTAGTGAGCTTGGATCTTTACTTGAACCGCTTAACTGGTCCAATCCCAGACACATTGAGCAAGCTTAAAAAACTACGCTTCCTGCGTCTGAACAATAACAGCTTGTCAGATGGCATTCCCATGTCTTTGACTACTGTTTCTTCACTACAAGTCCTTGATCTCTCAAACAACAAGCTAAAAGGAAATATCCCAGTCAATGGCTCATTTACATTGTTTACTCCCATCAGTTTTAACAATAATCCTGGATTAGTACAAACAGTTACTGCACGTCCGCCAATTTCTCTTACGCCACCAGCTCCTTCAGGTAACAGTGCTACTGGAGCTATTGCTGGAGGAGTTGCTGCTGGTGCTGCTCTGTTGTTTGCAGCCCCTGCTATTGCACTTGCTTATTGCAGAAGAAGGAAACAGGAGGATTATTTCTTTGATGTTCCTGCTGAGGAGGATCCTGAAGTTCACCTTGGTCAGCTTAAAAAGTTTCCCCTGCGTGAGCTGCAAGTTGCAACAGACAACTTTAGTAACAAAAACATTCTGGGTAGAGGTGGATTTGGTAAGGTTTACAAAGGACGATTAACTGATGGTTCTCTAGTTGCAGTAAAAAGACTTAAAGAGGAACGCACCCAGGGTGGAGAGCTGCAATTCCAAACAGAAGTGGAAATGATCAGCTTGGCTGTGCATCGTAATTTGCTTCGGCTGCGTGGTTTTTGCATGACTCCAACTGAACGGTTGCTTGTGTATCCTTACATGTCTAATGGTAGTGTGGCATCATGTTTACGAGATCGTCCGGAATCACAACCCGCACTTGAATGGGCTGTACGGAAGTGTATTGCTTTGGGAGCTGCAAGGGGGCTTGCTTATTTGCACGATCATTGTGATCCAAAGATTATTCACCGAGATGTCAAAGCTGCAAATATATTGTTGGATGACGAATTTGAAGCAGTTGTTGGAGACTTTGGTTTAGCAAAACTTATGGATTACAAAGATACTCATGTTACAACTGCTGTACGTGGCACGATTGGGCATATAGCACCAGAGTACCTCTCAACTGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGGTATGGTGTGACGCTTCTCGAACTAATAACTGGACAGAGGGCTTTTGATCTAGCTCGGCTTGCCAATGATGATGATGTCATGTTACTTGATTGGGTAAAAGGACTTTTGAAAGACAAGAAGTTGGAAACACTTGTCGATGCTGATTTACAGGGAAATTATCATGAAGAGGAAGTAGAGCAACTAATCCAAGTGGCCTTATTATGCACCCAAAGCTCCCCTGTGGAAAGACCAAAGATGTCTGAGGTGGTCAGAATGCTAGAAGGTGATGGTTTGGCTGAAAAATGGGAGCAATGGCAGAAAGAGGAGGTGTTCCGGCAAGATTACAACCAAGCCCTTCACCCCAATGCTAATTGGATAGTAGACTCTTCTTCACAAATCCCACCAGATGAACTGTCAGGTCCTAGATGA 1845 0.432 MEGVISFFMCSFLLWAILVFDLVLKASGNVEGDALSALKTSMTDPNNVLQSWDSTLVNPCTWFHVTCNSDNSVTRVDLGNANLTGLLVPQLGQLPNLQYLELYSNHISGKIPDELGNLTNLVSLDLYLNRLTGPIPDTLSKLKKLRFLRLNNNSLSDGIPMSLTTVSSLQVLDLSNNKLKGNIPVNGSFTLFTPISFNNNPGLVQTVTARPPISLTPPAPSGNSATGAIAGGVAAGAALLFAAPAIALAYCRRRKQEDYFFDVPAEEDPEVHLGQLKKFPLRELQVATDNFSNKNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISLAVHRNLLRLRGFCMTPTERLLVYPYMSNGSVASCLRDRPESQPALEWAVRKCIALGAARGLAYLHDHCDPKIIHRDVKAANILLDDEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVTLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKKLETLVDADLQGNYHEEEVEQLIQVALLCTQSSPVERPKMSEVVRMLEGDGLAEKWEQWQKEEVFRQDYNQALHPNANWIVDSSSQIPPDELSGPR 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2712 614 ProSitePatterns Protein kinases ATP-binding region signature. 297 319 IPR017441 GO:0005524
Glsi11g2712 614 Gene3D Ribonuclease Inhibitor 28 211 IPR032675 -
Glsi11g2712 614 FunFam Somatic embryogenesis receptor kinase 1 27 214 - -
Glsi11g2712 614 Pfam Leucine rich repeat N-terminal domain 31 68 IPR013210 -
Glsi11g2712 614 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 14 576 - -
Glsi11g2712 614 FunFam Somatic embryogenesis receptor kinase 1 260 367 - -
Glsi11g2712 614 FunFam Somatic embryogenesis receptor-like kinase 1 368 585 - -
Glsi11g2712 614 SUPERFAMILY Protein kinase-like (PK-like) 271 566 IPR011009 -
Glsi11g2712 614 Gene3D Phosphorylase Kinase; domain 1 260 367 - -
Glsi11g2712 614 SUPERFAMILY L domain-like 32 195 - -
Glsi11g2712 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
Glsi11g2712 614 Pfam Protein kinase domain 292 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g2712 614 SMART serkin_6 291 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g2712 614 ProSiteProfiles Leucine-rich repeat profile. 168 190 IPR001611 GO:0005515
Glsi11g2712 614 Gene3D Transferase(Phosphotransferase) domain 1 368 585 - -
Glsi11g2712 614 ProSiteProfiles Protein kinase domain profile. 291 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2712 Glsi-ChrGlsi11 20149436 20156426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2712 8 614 Receptor kinase-like Gene Family AT4G33430 76.292 0.0 946
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Glsi11g2712 Pkinase 2.1e-44 CL0016