Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2687 ATGAAAATTGGCAAAAGTTTTGCTGAAACGGTAGACCCTATCCTCTCCTCGTTTGAGGTTATTCAAGAAGGTTCTGTTCTGAACCTGAAATTATACTCACCACGAACCCTAAACCCAATCTCATATTCCCCTCTTTCCCCCCTCTACTCTCTCTTTTCTGTGCTCCAAACTCCAAGCATGTCTCACTTTGGAAGGTCTGGTCCCCCGGACATCACTGATACTTACTCTCTTCTAGTACTCAACATCACATTCCGTACAACCGCTGATGACTTGTTTCCGCTGTTTGATAAGTATGGAAAGGTCGTTGATATATTCATCCCCAGAGATCGAAGGACCGGTGAATCAAGGGGTTTTGCATTTGTGCGTTATAAGTATGCTGATGAGGCGCAAAAGGCAGTGGAAAGGCTGGATGGAAGAGTAGTTGATGGCCGAGAAATAACTGTTCAGTTTGCAAAATATGGGCCTAATGCAGAGAGGATCCACAAAGGAAGGATTAGTGAAACATTCCCAAAATCTAGATACAGGTCAAGGAGCCGCAGCCCCAAGAGAAGGTATCGCGATGATTACAGAGACAGGGATTACCGGAGGAGAAGTCGCAGCAGGAGTTATGATAGGTATGAACGTGACAGGCACCGTGGGAGGGACAGAGATTATCGTCGCCGAAGCAGGAGCCGCAGTGCAAGTCCCGATTACTACAAGAGCCGAGGAAAGGGACGCTATGATGATGAGCATCGCAGCCGAAGCCGTAGCCGATCAGTGGATAGTCGCTCTCCTCCACGACGCAGTCCCAGTCCTCGAAGGAGTCTTTCGCCGCAGAGGAGTCTTTCTCCTCAAAAAAGTATTTCCCCACGGAAGAGTCCAAGGGGTGAAAGCCCTGAGAGTCGTAGCCGTGATGGACGATCTCCTACGCCTCGCAGTGTCTCACCACGTGGTCGACCTGATTATTCACGAAGTCCGTCCCCTCGAAATTCTGATGATGAATGA 984 0.4898 MKIGKSFAETVDPILSSFEVIQEGSVLNLKLYSPRTLNPISYSPLSPLYSLFSVLQTPSMSHFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEAQKAVERLDGRVVDGREITVQFAKYGPNAERIHKGRISETFPKSRYRSRSRSPKRRYRDDYRDRDYRRRSRSRSYDRYERDRHRGRDRDYRRRSRSRSASPDYYKSRGKGRYDDEHRSRSRSRSVDSRSPPRRSPSPRRSLSPQRSLSPQKSISPRKSPRGESPESRSRDGRSPTPRSVSPRGRPDYSRSPSPRNSDDE 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2687 327 MobiDBLite consensus disorder prediction 161 327 - -
Glsi11g2687 327 MobiDBLite consensus disorder prediction 181 256 - -
Glsi11g2687 327 MobiDBLite consensus disorder prediction 257 285 - -
Glsi11g2687 327 MobiDBLite consensus disorder prediction 286 300 - -
Glsi11g2687 327 Gene3D - 58 162 IPR012677 -
Glsi11g2687 327 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 77 147 IPR000504 GO:0003723
Glsi11g2687 327 FunFam Serine/arginine-rich splicing factor SC35 63 162 - -
Glsi11g2687 327 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 75 153 IPR000504 GO:0003723
Glsi11g2687 327 SUPERFAMILY RNA-binding domain, RBD 64 160 IPR035979 GO:0003676
Glsi11g2687 327 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 73 292 - -
Glsi11g2687 327 SMART rrm2_1 76 149 IPR003954 GO:0003676
Glsi11g2687 327 SMART rrm1_1 76 149 IPR000504 GO:0003723
Glsi11g2687 327 CDD RRM_SRSF2_SRSF8 77 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2687 Glsi-ChrGlsi11 19943119 19949452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2687 73 151 Eukaryotic Initiation Factors Gene Family AT3G11400 35.443 1.41e-09 56.6