Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2683 ATGGATTCCACACAAATGGCGATTTTCAAATCTCTTAACCGCCATTTCGGCAGAGCTCCTCCGAGTCAATGCATACCCACGGCAATTCTCCGTCGCAGGCTTAAATGCATTGCTCACAACTACGCCATTCATAAGTCCAACTCTTTTGCTTCTTCGCCCTCGCTCAGGAGCTTGTGTGTGCTGGTCACCCGACTGCCCTGTCGTTTCCAGTGCGTTTCGAGCTCCGCTGCTTCGTTTGCTTCTTCTGGCGGTATAAATGGTGGGAAGAGTGGCGGTGGTCCTGGTGGAGGCGGTGGCAGCGGCGGTGCGGGTGGTGAGTCTGGAGATGCCAATCCCAAATTGGTTGGCGATGGGGCTAAAGAACTTTCGGCACTTTCACCTGATGTTATTATTCTCGATGTTGAGGGAATGGTGTGCGGGGGATGTGCAGCTAATGTGAAAAGAATTCTAGAAAGTCGACCTCTAGTGTCATCTGCTAGTGTAAATCTAACGACAGAGACAGCAATAGTTTGGCCTGTATCTGAAGCAAAAACTGTACCAAATTGGCAAAAGCAATTAGGAGAGGCACTTGCAGAGCATTTGACTAACTGTGGTTTCAAGTCTAGCCCTCGAGATTCAGCGAGAGACAGTTTCCTCCAAGTTTTTGAAAGGAAGATGGAGGAAAAGCGTAGACAGTTGAGAGAAAGTGGTCACGAGTTAGCTGTTTCCTGGGCTCTATGTGCTGTCTGCCTTGTGGGTCATCTCTCTCATTTCTTTGGAGCGAAGGCACCATGGACTCACGCATTTCATTCCACTGGGTTTCATTTATCCCTGTCTTTGTTTACATTGCTTGGTCCTGGGCGCCAACTTATTCTTGATGGCATAAAAAGCCTTTTCAAAGGGGCACCAAACATGAACACCTTAGTTGGTCTTGGGGCTTTATCATCATTTACTGTCAGTTCATTTGCTGCCTTGCTGCCAAAATTGGGCTGGAAGGCTTTCTTTGAAGAACCAATTATGCTAATCGCATTTGTCTTGTTAGGAAGGAATCTTGAACAAAGAGCTAAGATTAAAGCAACCAGTGATATGACAGGACTTCTTAGTATATTGCCATCAAAAGCTCGTCTTCTGGTTAGCAATGGCAGTAGGGAGTTTGGCTCAAGTGTTGAGGTTCCTTCTGACAGTCTTTCCGTTGGAGACCAGATTCTTGTGCTACCTGGAGATCGTATCCCAGCAGATGGAATTGTCAGAGCTGGTAGAAGCACTGTAGATGAGTCAAGTTTTACTGGAGAGCCACTGCCGGTGACAAAATTACCTGGGAGTCAGGTTGCAGCTGGAAGTATAAATCTTAATGGATCTCTTACAATTGAAGTGCAGAGACCAGGCAGTGAGACTGCTATGGGAGACATTTTTCGTCTGGTTGAAGAAGCACAGAGTAGGGAAGCTCCAGTACAGCGTTTGGCTGACAAGGTGGCTGGACACTTCACTTATGGAGTAATGGCAATTTCTGCAGCTACATTTACATTCTGGAGTTTGTATGGCACACGCATTCTACCTACTGCTCTATACCAAGGCAATGCAGTTTCTCTGGCATTGCAACTTGCTTGCAGTGTTCTGGTTGTTGCTTGTCCATGTGCACTTGGGTTGGCCACGCCTACAGCTGTGCTGGTTGGAACTTCTTTGGGAGCTACAAGAGGATTACTTTTGCGAGGCGGAAATGTTCTAGAAAAGTTTTCGATGGTAAACTCTATTGTGTTTGACAAAACAGGAACCCTCACAATTGGTAGACCTGTTGTGACAAAGATTGTCACAAATACATGTGGACGAAACCAAAACTCAAGCCAAACTGTGGACAATGTTTGGTCGGATGTTGAAGTTCTGAGGTTAGCTGCTGGAGTAGAATCAAATACGGTACATCCAGTTGGGAAAGCAATTGTTGAAGCTGCTCAGGCAGTTAATTGTCATAATACAGAGGTAGCAGATGGAACATTCCTGGAAGAACCTGGATCTGGCGCTGTAGCAACCATTGATAACAAAAAGGTTTCTGTTGGGACTTTGGAATGGGTCACCAGGCAGGGAGTTAACAAAAATATTAATCAAGAAGTGGAGGAGTATAAAAACCAGTCTGTTGTCTATGTTGGAATTAATGATACTCTATCTGGCCTTATTTATATTGAAGACCAGATAAGGGAAGATGCAAGACAAGTAGTTGAAGCATTGTCTAACCAAGGAATTGGCGTATACATGCTCTCTGGAGACAAAAGGAGTACCGCTGAGTATGTTGCATCTGTTGTTGGAATTCCTAAAGAGAAGGTGCTATCTGGAGTGAAACCAGATGAAAAAAAGAAGTTTATAAATGAACTCCAGATAGATCAGAAAGTTGTAGCTATGGTTGGTGATGGAATCAATGATGCAGCTGCCTTGGCTGCGTCACATATTGGTATTGCATTAGGTGGAGGTGTAGGAGCTGCTAGTGAGGTGTCTTCTGTTGTACTGATGGGCAACAGGCTTTCCCAGCTGCTTGATGCTTTGGATCTTAGCAGGCTAACCATGAAGACTGTGAAACAAAATCTCGGGTGGGCTTTCCTATACAACATTGTTGGAATTCCAATTGCAGCTGGATTGTTATTTCCCGTAAATGGGACCATGCTGACTCCATCCATTGCAGGGGCTCTCATGGGGTTGAGTTCCATAGGGGTAATGACAAACTCGTTACTTTTGAGATTCAGATTTTCCACAAAGCAAAAACAAATACATGGAGTATCCCCAAAGACCAAAACCCATGTAGACTGTGATCTTGTCGACCAAAAAGAGAAATTGAAGTATGGACAATAA 2814 0.4492 MDSTQMAIFKSLNRHFGRAPPSQCIPTAILRRRLKCIAHNYAIHKSNSFASSPSLRSLCVLVTRLPCRFQCVSSSAASFASSGGINGGKSGGGPGGGGGSGGAGGESGDANPKLVGDGAKELSALSPDVIILDVEGMVCGGCAANVKRILESRPLVSSASVNLTTETAIVWPVSEAKTVPNWQKQLGEALAEHLTNCGFKSSPRDSARDSFLQVFERKMEEKRRQLRESGHELAVSWALCAVCLVGHLSHFFGAKAPWTHAFHSTGFHLSLSLFTLLGPGRQLILDGIKSLFKGAPNMNTLVGLGALSSFTVSSFAALLPKLGWKAFFEEPIMLIAFVLLGRNLEQRAKIKATSDMTGLLSILPSKARLLVSNGSREFGSSVEVPSDSLSVGDQILVLPGDRIPADGIVRAGRSTVDESSFTGEPLPVTKLPGSQVAAGSINLNGSLTIEVQRPGSETAMGDIFRLVEEAQSREAPVQRLADKVAGHFTYGVMAISAATFTFWSLYGTRILPTALYQGNAVSLALQLACSVLVVACPCALGLATPTAVLVGTSLGATRGLLLRGGNVLEKFSMVNSIVFDKTGTLTIGRPVVTKIVTNTCGRNQNSSQTVDNVWSDVEVLRLAAGVESNTVHPVGKAIVEAAQAVNCHNTEVADGTFLEEPGSGAVATIDNKKVSVGTLEWVTRQGVNKNINQEVEEYKNQSVVYVGINDTLSGLIYIEDQIREDARQVVEALSNQGIGVYMLSGDKRSTAEYVASVVGIPKEKVLSGVKPDEKKKFINELQIDQKVVAMVGDGINDAAALAASHIGIALGGGVGAASEVSSVVLMGNRLSQLLDALDLSRLTMKTVKQNLGWAFLYNIVGIPIAAGLLFPVNGTMLTPSIAGALMGLSSIGVMTNSLLLRFRFSTKQKQIHGVSPKTKTHVDCDLVDQKEKLKYGQ 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2683 937 FunFam Copper-transporting ATPase PAA1 chloroplastic 589 722 - -
Glsi11g2683 937 SUPERFAMILY Calcium ATPase, transduction domain A 379 467 IPR008250 -
Glsi11g2683 937 Pfam E1-E2 ATPase 363 556 - -
Glsi11g2683 937 FunFam Copper-transporting ATPase PAA1 chloroplastic 707 858 - -
Glsi11g2683 937 Gene3D - 569 841 IPR023214 -
Glsi11g2683 937 PRINTS P-type cation-transporting ATPase superfamily signature 814 826 - -
Glsi11g2683 937 PRINTS P-type cation-transporting ATPase superfamily signature 736 746 - -
Glsi11g2683 937 PRINTS P-type cation-transporting ATPase superfamily signature 578 592 - -
Glsi11g2683 937 PRINTS P-type cation-transporting ATPase superfamily signature 714 725 - -
Glsi11g2683 937 PRINTS P-type cation-transporting ATPase superfamily signature 791 810 - -
Glsi11g2683 937 PRINTS P-type cation-transporting ATPase superfamily signature 417 431 - -
Glsi11g2683 937 CDD HMA 132 202 IPR006121 GO:0046872
Glsi11g2683 937 Gene3D - 589 722 IPR023299 GO:0000166
Glsi11g2683 937 FunFam Copper-transporting ATPase PAA1, chloroplastic 128 203 - -
Glsi11g2683 937 ProSitePatterns E1-E2 ATPases phosphorylation site. 580 586 IPR018303 -
Glsi11g2683 937 SUPERFAMILY HMA, heavy metal-associated domain 130 179 IPR036163 GO:0046872
Glsi11g2683 937 ProSiteProfiles Heavy-metal-associated domain profile. 128 202 IPR006121 GO:0046872
Glsi11g2683 937 ProSitePatterns Heavy-metal-associated domain. 134 163 IPR017969 GO:0046872
Glsi11g2683 937 NCBIfam HAD-IC family P-type ATPase 622 870 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi11g2683 937 NCBIfam HAD-IC family P-type ATPase 381 599 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi11g2683 937 NCBIfam heavy metal translocating P-type ATPase 298 900 IPR027256 GO:0006812|GO:0016020|GO:0019829
Glsi11g2683 937 Pfam haloacid dehalogenase-like hydrolase 575 804 - -
Glsi11g2683 937 SFLD p-type atpase 561 841 IPR044492 -
Glsi11g2683 937 FunFam Copper-transporting ATPase 1, putative 349 471 - -
Glsi11g2683 937 Gene3D - 348 471 - -
Glsi11g2683 937 PANTHER ATP7, ISOFORM B 126 902 - -
Glsi11g2683 937 SUPERFAMILY HAD-like 577 898 IPR036412 -
Glsi11g2683 937 CDD P-type_ATPase_HM 233 899 - -
Glsi11g2683 937 Coils Coil 212 232 - -
Glsi11g2683 937 Pfam Heavy-metal-associated domain 132 200 IPR006121 GO:0046872
Glsi11g2683 937 SUPERFAMILY Calcium ATPase, transmembrane domain M 332 865 IPR023298 -
Glsi11g2683 937 Gene3D - 129 204 - -
Glsi11g2683 937 NCBIfam copper-translocating P-type ATPase 280 901 - -
Glsi11g2683 937 SFLD Haloacid Dehalogenase 561 841 - -
Glsi11g2683 937 MobiDBLite consensus disorder prediction 78 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2683 Glsi-ChrGlsi11 19879363 19914069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2683 289 901 Primary Pumps ATPases AT1G63440 39.308 6.20e-124 398