Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2681 ATGGCGGACCGTGGTTCTTCAGGCTTGGGCCCTCAATTAGATATTCAGCAATTACAATTTGAAGCCCAGCGACGGTGGTTGCGGCCTGCTGAAATTAGTGAAATTCTTCGTAATTATCAGATGTTTGATATCACATCAGAACCTCCAAACAGGCCACCAAGTGGTTCACTTTTTCTTTTTGATCGGAAGGTGTTGAGATATTTTAGAAAGGATGGACATAATTGGAGAAAGAAAAAAGATGGAAAGACTGTGAAGGAAGCTCATGAAAAGTTGAAGGTGGGAAGCATTGATGTATTACATTGCTACTATGCCCATGGAGAAGAAAATGAAACTTTTCAGAGGCGAAGCTATTGGATGCTTGAACCGGATATGATGCACATTGTTTTTGTCCACTACTTGGAAGTTAAGGGTAACAAGACAAATGTAGGAGGAAAAACAGATACTGCTGAGGTTTCATCAGATTCCATGAAGGGCAGCTCTGCATCATCTGGTTTTCCTGCAAATTATAGCACTGTGCCTTCAAGAAGTACAGATTCCATGAGCCCAACTAGTACATTGACTTCCTTATGTGAAGATGCTGATTCTGGTGATCATGGACAGTCATCAATTTCTGGAACTGATTATATTCCACTTGTTCAGCGAGATAAACCTAGAGGAAGTGATACCAGTACTTCTTTCATTGAGGGACAAAAAGCTTACGGCATGGCATCATGGGACAATGTCTTTGAACAATGTAGAGATGGATTAGATGCTGATCCTTCTTCTGTATCATTTCCTTCCATCCCATCCAGTTCAATTGGAGACATCCTTGAACAAGAACATCCTGTTCTTGGCGACCTTTTAGAAAGTAAGAGTGTCCTCACTGGGGAGGAAGGGAGGTCTCAGTCTCTCGAATCAAATTGTCAGATCCCTTTCGAAAACAATCCTGGACCATTGCCCCAGTGGCCCACAACCCAGTCGTTGGGATTGAAATTTGGATCTGATTTTAGCACTTGTTTCCTGGAACATGAAACACATAATCTGAGTCCTGAAATTACTCCTGACTTGTTCAGTTTTGTGGGTCAACCAAAAGATGAGCCTGTGCAGGACAACTGTCCAAAGCAGGATACAGATACACAATTGCAGTTTTTGCTGAAATCCAAATTTGAGAACGAAGTTCCTGCAGAAGAAAGTATCAACTATGCCTTGACTGTGAGGCGCACATTATTAGATGGGGAGGAGAGCCTAAAGAAAGTTGACAGCTTCTCTCGATGGATTACTAAAGAACTTGAAGAGGTGGATGATCTCCATATGCAGTCCTCGCCTGGTATTTCGTGGGGCACAGACGAATGTGGGCATGTGATAGATGATTCCTCATTGAGCCCCTCCCTCTCTCATGACCAGCTGTTTAGCATAAATGATTTTTCACCTAAGTGGGCTTATGCTGCAACAGAAACTGAGGTTTTGATTATTGGGACATTTTTGAAGAGTCAACCTGAGGTAGCAAACTGTAACTGGTCATGCATGTTTGGGGAAGTGGAGGTTCCTGCTCAGGTTCTAGCCAGTGGAATTCTGTGCTGTCATGCTCCACCTTATAAAGTTGGACGGGTCCCCTTCTATGTAACGTGCTCCAATAGGTTGGCTTGCAGTGAAGTGCGGGAGTTTGACTACACAGAGGGGTTTGCTAGAAATGCAGATATTTCAGATTTCTATAGCAGTTCAATTGAAATGATGCTTTATTCAAGACTGGAGAAGTTACTTTCTTCAAAATCAGCCCACCCTTCGAATTGCACCTTTGACTGTGATATGGTAAAAATAAAATTAATTTTTAAGCTAATTTCAAGAAAGGAGGATGAGGAGTTTTCAAATAAGGAAGAGCTGAAGTTAGAGATAGATGCATCCGAACACAAAGTGAAGGAGCAACTATTTCAAAGGCAGGTTAAAGAGAAGCTGTATATGTGGCTGCTTCACAAAGTAATTGAAGATGGTAAAGGGCCAAATGTATTAGATGAGGAGGGGCAGGGTGTGCTACATTTAGCAGCTGCTCTTGGTTGTGATTGGACAATAATGCCAATTATAACTGCTGGAGTTAATATTAATTTCCGGGATGTGAATGGATGGACGGCTCTGCATTGGGCTGCATCATGTGGCAGAGAACGGACTGTTGCTGTACTGGTTTCATCGGGTGCAGCTGCTGGAGCATTGACAGATCCATCTCCAGCATTTCCTTTAGGTAGAACACCTGCAGATCTTGCTTCTAGCAATGGACACAAAGGAATCTCTGGTTTTCTTGCAGAGTCTTTATTAACTAGCCACCTCTCATCCCTCACAATGGATGATCTAAAGGAAGATGGTGGGCCAAATGCTTCAGAAGTGAAAACGGTACAGACAGTTTCTGAACGAACTGCAACACCTGAATTTTGTGGAGATATACCTGACGCCCTCTGTCTTAAAGATTCTCTTACTGCTGTCCTTAACGCCACACAAGCTGCTGCTCGTATACATCAAGTATTCAGAATGCAGTCATTTCAAAGGAAACAGTTGACTCTGTACAAAGATGATGAGCAGCTTGGACTGTCATATCAGCGAGCTCTTTCCCTTCTAGCTTCTAAGGCATGCAAGGTTGGACAAGGAGATGGTTTAGCCCATGATGCTGCAGTACAAATACAGAAAAAGTTTCGTGGTTGGAAAAAGAGAAAAGAATTCCTGATAATTCGTCAAAGAATTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTAAGGAAGCAGTATAAACCAATCATCTGGTCTGTAGGAATTGTAGAGAAGGTAATATTACGATGGAGACGCAAGGGCAGTGGTCTACGTGGATTTCGACCAAATTCTCTTAATAAGATCCCCAATCAATCACAGAGTGATACTTTGAAAGAGGATGATTACGATGTTCTTAAGGAAGGAAGGAAACAAAGTGAGGAAAGATTCCAAAAGGCCCTTTCAAGGGTGAAGTCCATGGTTCAGTATCCAGAGGCACGGGCTCAATACCGGCGTCTGCTAAATGTTGTCGAGGACTGTCGTCAAACCAAGGCATGCAATATGGATTTGATAAATTCAGAAGAGACAGGTGATGGTGTAGGGGACCTGATTGATATTGATATGCTTTTAGATGATGACAATTTCATACCTATAGCATTTGATTGA 3159 0.4248 MADRGSSGLGPQLDIQQLQFEAQRRWLRPAEISEILRNYQMFDITSEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENETFQRRSYWMLEPDMMHIVFVHYLEVKGNKTNVGGKTDTAEVSSDSMKGSSASSGFPANYSTVPSRSTDSMSPTSTLTSLCEDADSGDHGQSSISGTDYIPLVQRDKPRGSDTSTSFIEGQKAYGMASWDNVFEQCRDGLDADPSSVSFPSIPSSSIGDILEQEHPVLGDLLESKSVLTGEEGRSQSLESNCQIPFENNPGPLPQWPTTQSLGLKFGSDFSTCFLEHETHNLSPEITPDLFSFVGQPKDEPVQDNCPKQDTDTQLQFLLKSKFENEVPAEESINYALTVRRTLLDGEESLKKVDSFSRWITKELEEVDDLHMQSSPGISWGTDECGHVIDDSSLSPSLSHDQLFSINDFSPKWAYAATETEVLIIGTFLKSQPEVANCNWSCMFGEVEVPAQVLASGILCCHAPPYKVGRVPFYVTCSNRLACSEVREFDYTEGFARNADISDFYSSSIEMMLYSRLEKLLSSKSAHPSNCTFDCDMVKIKLIFKLISRKEDEEFSNKEELKLEIDASEHKVKEQLFQRQVKEKLYMWLLHKVIEDGKGPNVLDEEGQGVLHLAAALGCDWTIMPIITAGVNINFRDVNGWTALHWAASCGRERTVAVLVSSGAAAGALTDPSPAFPLGRTPADLASSNGHKGISGFLAESLLTSHLSSLTMDDLKEDGGPNASEVKTVQTVSERTATPEFCGDIPDALCLKDSLTAVLNATQAAARIHQVFRMQSFQRKQLTLYKDDEQLGLSYQRALSLLASKACKVGQGDGLAHDAAVQIQKKFRGWKKRKEFLIIRQRIVKIQAHVRGHQVRKQYKPIIWSVGIVEKVILRWRRKGSGLRGFRPNSLNKIPNQSQSDTLKEDDYDVLKEGRKQSEERFQKALSRVKSMVQYPEARAQYRRLLNVVEDCRQTKACNMDLINSEETGDGVGDLIDIDMLLDDDNFIPIAFD 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2681 1052 ProSiteProfiles Ankyrin repeat region circular profile. 698 723 - -
Glsi11g2681 1052 Gene3D - 875 921 - -
Glsi11g2681 1052 Gene3D Immunoglobulins 458 553 IPR013783 -
Glsi11g2681 1052 ProSiteProfiles IQ motif profile. 875 904 IPR000048 GO:0005515
Glsi11g2681 1052 MobiDBLite consensus disorder prediction 141 206 - -
Glsi11g2681 1052 FunFam Calmodulin-binding transcription activator 2 458 554 - -
Glsi11g2681 1052 SMART iq_5 874 896 IPR000048 GO:0005515
Glsi11g2681 1052 SMART iq_5 897 919 IPR000048 GO:0005515
Glsi11g2681 1052 Pfam IQ calmodulin-binding motif 900 919 IPR000048 GO:0005515
Glsi11g2681 1052 Pfam IQ calmodulin-binding motif 876 895 IPR000048 GO:0005515
Glsi11g2681 1052 ProSiteProfiles Ankyrin repeat profile. 698 730 IPR002110 GO:0005515
Glsi11g2681 1052 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1013 - -
Glsi11g2681 1052 SMART ANK_2a 698 727 IPR002110 GO:0005515
Glsi11g2681 1052 SMART ANK_2a 737 766 IPR002110 GO:0005515
Glsi11g2681 1052 SMART ANK_2a 665 694 IPR002110 GO:0005515
Glsi11g2681 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 874 925 IPR027417 -
Glsi11g2681 1052 Gene3D - 624 766 IPR036770 -
Glsi11g2681 1052 ProSiteProfiles IQ motif profile. 898 922 IPR000048 GO:0005515
Glsi11g2681 1052 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Glsi11g2681 1052 SUPERFAMILY Ankyrin repeat 647 758 IPR036770 -
Glsi11g2681 1052 Pfam IPT/TIG domain 465 543 IPR002909 -
Glsi11g2681 1052 SUPERFAMILY E set domains 465 550 IPR014756 -
Glsi11g2681 1052 SMART CG_1_2 18 136 IPR005559 GO:0003677
Glsi11g2681 1052 MobiDBLite consensus disorder prediction 140 206 - -
Glsi11g2681 1052 Pfam Ankyrin repeats (3 copies) 670 759 IPR002110 GO:0005515
Glsi11g2681 1052 FunFam Calmodulin-binding transcription activator 2 874 922 - -
Glsi11g2681 1052 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2681 Glsi-ChrGlsi11 19839685 19853818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2681 1 1029 CAMTA Transcription Factor Family AT5G64220 53.723 0.0 1045
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Glsi11g2681 CG-1 2e-50 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g2681 11 19839685 19853818 Glsi11g2681 11 19839685 19853818 CCT