Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2676 ATGGCCACAGTCGCCCCCAACGCGCCACCATCAGGGCCGCAGCAAGCCCTCAAATTGGAATCCCTTGCTCGCATAGATACCACCACTCTCTCCCAGTCTGAGCTCCAAGCCCTCTCGCTCTGCTCACTCTCCGCCTTCGACCTCCGCTCCACCAATGACCTTGTTAACCCGAAAGTTGACCGTGCATTCTTCAACGAGAGCGCTGGCACCCGCCGCCAGACCTACTCTAGACCCAGGAAAGCCCAATCTCCTTCTGATTCTCCCACTGGCCACCGTCGCCGCGTGGCTGGGCTTCTTCCCACTCCGAAGCTCCCTCCGGTTCCTGATGACGACCCGGAGAACATAGAAAACCGCAAGATTATAGATTACCTGAAGCAATTGATCAGGGAAGACCCAAAATTTGATCAAGTTGAGCTAGCCCCACCTTCGGTTTCCGCGGAAATTGTATCGAATCCCGAACCTAGGGGCGGAATGGTGGCCAGAGAGGATGTGGGGTTGATGAAATTTGGTGGGGAACGAAAGAGGAAGAGGGGGAGGAAGCCCAAAGTGAAGGTGCATTTGAAGGAGTGCTACCGGGGGATGGAGATTGTGAATAAGAATGGTGTTGCGATTGATCCTTCTGCTTTGGCGAATGCGGAGGATCCTTTTGCCGAGGAGTTGAGGAGAAGGACAGCGGGTTTGCAGAGTGAAGAAGAGCTGTTGGGCTTTTTGAGGGATTTGGGAGGACAATGGGGTAGTAGGAGGAAGAAGAGGAAGATTGTGGACGCCGGAGATTTCGGGGATGTATTGCCGGTTGGTTGGAAACTTCTGCTGGGTTTGAAGAGAAAGGACGGTCGTGCGTGGATTTATTGCCGCAGATACATAAGTCCTAGTGGACAACAATTTGTATCTTGCAAAGAAGTTGCTTCATATCTGCTGGCCCTTTTTGGTCACAATGATGCACAATTATCAATCAGTTGTAGGGGTGAAAATATGCTGCAGGACAATAGAGTGACTACTGAAAGTTCTGCAGGTGTTACCCATGGGGATCAAGATCAAAGGAAGATCATTGCAACTAACTCAGCTGTACCCAGTTGTTCTGTATCTGATGAAAGATTGAAGGAAGTGGCCTTATTGGGAATTGACAATCTTGCAGATGTGCAAATACATGACTTATTTGAATGTCACAAATGCAGCATGACCTTTGATGAGAAGGATTCATACTTGCAGCATTTGTTGTCATTTCATCAGAGGACAACAAGGCGGTATCGACTTGGTTCTTCTGTCGGAGATGGAGTTATAATTAAAGATGGAAAATTTGAGTGCCAGTTCTGCCATAAGATATTTCTGGAAAGGCGTCGCTACAATGGTCATGTGGGGATCCATGTTAGGAACTATGTGAGGAGAGTTGAAGAATCGCCAGGTCAAGTAAATGTCCAAAGGAAAGATAAGTCTCCTGTGAAGGAGAATTTGCCTTCAAGGATTTCTAAAATGGATGCTCTAATTGAAATTGCTCAAAACTCTATTATGGAGAATTCTACAATGGAACCCCATAGTAACCATGCTTCCTATCCTGGAAAACTGAATGCCACTTCTGCTTCAGAAATTGCTGTTGGCAACATAGATCATGACATAAATTTCGAGTCTCCTCTCAGTGAAAAGCAAATGGAAGATAGCATCACTGGCAAAGATGTGGATCAAGATTTAAATCGGCAAGGTAGTCAGCATGTACTCATGGATGAAAAGGCAGAGAAAATTGATGATGTTGACAATGTTATAAATGGTAAGGTAGATACCTGTCTGGATAACATGAGCTTGTCATCTGTAAACAAGAAAAATGTTAATGCATCTGAAAATTCTACGGAAAGTGATGATGCGGCATTGACTATTGATGGTGTTGATCAGTCTGGGGTTGATTTGGAAGGAGTTTCCCAAAGCCCTTTACTTCCATTACCTGACAATTGTATAATACTCGAAGCTGAGAATAATGGAAATTCTGGTAGCTCTATGGAGCAACTTAAGCTTGATGAAGACAATAGAAATAAGAGTGAGTTAAAAATTGGATTAGGTGGCAGCAAAGATGCATCCGTGAGCTCTAATATCCAAGAGACAGTAATGCCAACTTCTGAGGAGAATGTGATCCAGTCTGGGGCTTCTGCCCCCTCTATGTCCATGGTGCAATCTTTGGATTGTTTTCCCGCATTCAGTGGACTCTTAGATAAGGGGGGGAAACAATTTTGCAGTGTTGACCACAAACATGATAATGTGACTGAGTTCCAGGAACTGAGGTTGGATGAATTCGAAACTCTGAAGTATGATTTTGCAAATGGTCAAGATTCACTTTCTCCGTCTCATGTGCCGACAGATTTGGCAAACAACACAGAGATGGAAGGGGCAAATGCTTCCTCAGTTCAGTTTGAATCACAAGAAGTTATGTTAAATATGGCAGGCAGAAATCAGCTTACAACAGCGTGTGTATGGTGTGGAATAGAGTTTAATTATGATGCTGCTGATTCTGAAATACAACCAGATTCTGATGTTCTCATTCTATGTACTAGGATATTTTATAGGCCGCTGAATGATGTTTGGAAGATCAGTACAAAGAGAGGATCTAAAGCGAGATTTCAGCTTCCTGCGGTATCCTCACTTCTGCCACCTACGAAGATTGTATTGTAG 2655 0.4478 MATVAPNAPPSGPQQALKLESLARIDTTTLSQSELQALSLCSLSAFDLRSTNDLVNPKVDRAFFNESAGTRRQTYSRPRKAQSPSDSPTGHRRRVAGLLPTPKLPPVPDDDPENIENRKIIDYLKQLIREDPKFDQVELAPPSVSAEIVSNPEPRGGMVAREDVGLMKFGGERKRKRGRKPKVKVHLKECYRGMEIVNKNGVAIDPSALANAEDPFAEELRRRTAGLQSEEELLGFLRDLGGQWGSRRKKRKIVDAGDFGDVLPVGWKLLLGLKRKDGRAWIYCRRYISPSGQQFVSCKEVASYLLALFGHNDAQLSISCRGENMLQDNRVTTESSAGVTHGDQDQRKIIATNSAVPSCSVSDERLKEVALLGIDNLADVQIHDLFECHKCSMTFDEKDSYLQHLLSFHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKIFLERRRYNGHVGIHVRNYVRRVEESPGQVNVQRKDKSPVKENLPSRISKMDALIEIAQNSIMENSTMEPHSNHASYPGKLNATSASEIAVGNIDHDINFESPLSEKQMEDSITGKDVDQDLNRQGSQHVLMDEKAEKIDDVDNVINGKVDTCLDNMSLSSVNKKNVNASENSTESDDAALTIDGVDQSGVDLEGVSQSPLLPLPDNCIILEAENNGNSGSSMEQLKLDEDNRNKSELKIGLGGSKDASVSSNIQETVMPTSEENVIQSGASAPSMSMVQSLDCFPAFSGLLDKGGKQFCSVDHKHDNVTEFQELRLDEFETLKYDFANGQDSLSPSHVPTDLANNTEMEGANASSVQFESQEVMLNMAGRNQLTTACVWCGIEFNYDAADSEIQPDSDVLILCTRIFYRPLNDVWKISTKRGSKARFQLPAVSSLLPPTKIVL 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2676 884 ProSitePatterns Zinc finger C2H2 type domain signature. 435 455 IPR013087 -
Glsi11g2676 884 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 253 325 IPR001739 GO:0003677
Glsi11g2676 884 ProSitePatterns Zinc finger C2H2 type domain signature. 388 409 IPR013087 -
Glsi11g2676 884 SMART c2h2final6 386 409 IPR013087 -
Glsi11g2676 884 SMART c2h2final6 433 455 IPR013087 -
Glsi11g2676 884 ProSiteProfiles Zinc finger C2H2 type domain profile. 386 414 IPR013087 -
Glsi11g2676 884 SUPERFAMILY DNA-binding domain 261 308 IPR016177 GO:0003677
Glsi11g2676 884 Gene3D Classic Zinc Finger 375 460 - -
Glsi11g2676 884 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 1 632 IPR037472 -
Glsi11g2676 884 MobiDBLite consensus disorder prediction 65 114 - -
Glsi11g2676 884 MobiDBLite consensus disorder prediction 67 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2676 Glsi-ChrGlsi11 19729804 19733809 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi11g2676 None None None