Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2651 ATGATGATGTTAGATGGTGGATTCTATAGATTGCCTAGTGATATTCCCAAATCCCTTTGGAGATACCCTTTTAGACTTCATTTCCTTCCACAATGGGTGGATATTGCTATCTTGCTAGGAATGGTAGTTCTATATAGAGTCCTGTTTTTAGTTATCATTAAGAGCATTGAGAAGGTGAAGCCTATTGTTGCAGCTATTAATTATCCCCAAGCAAATTTCAAGCCACATTTATTGAACCCTAATGATGTTGGTACTTCACCTAGCTTCAAGCTCTTCAAGACTATCAAGTACAAAGGGGATCATGCAGAGATGTTGGTACTTTGGAAAGCAAGGACTCTTAACTGGGAAGGGGAGAAGAGACTCCCCGCTTCTCAGGTGCTGGCGCTTCTCTTTCACGGAGGCGATATGGAAAACGACGATGTCGATATGCAGGGCGCAGAGAACAGCGAAGCAGAATTGGATGACATGAAGAAGCGCTTGAAGGAAATGGAAGACGAAGCTGCTGCTTTGCGAGAGATGCAGGCCAAGGTGGAGAAGGAAATGGGCTCCGTTCAAGATCCTGCTAGTGCTGCTGCAAGTCAGGCCAATAGAGAGGAAGTAGATGCTCGATCAATCTTTGTAGGCAATGTAGACTATTCATGTACTCCTGAAGAAGTGCAGCAGCATTTCCAATCATGTGGAACAGTTAACAGAGTTACCATTCGTACTGATAAATTTGGCCAACCCAAGGGTTATGCTTATGTTGAGTTCCTTGAAACAGAGGCTGTTCAGGAGGCCCTTCTGCTTAATGAATCTGAACTACATGGGCGCCAATTGAAGGTAACAGCCAAGAGGACCAACATACCTGGGATGAAGCAGTATCGTCCCCGCAGGCCTAATCCTTCTATGGGGTTTCGTGGCAGAACTCCATATGCACCTCCTTTTGCCTATTCCCCATATGGATATGGAAAGGTTCCAAGGTTCAGAATGCCAATGCGTTACAGCCCCTACTATTGA 996 0.4508 MMMLDGGFYRLPSDIPKSLWRYPFRLHFLPQWVDIAILLGMVVLYRVLFLVIIKSIEKVKPIVAAINYPQANFKPHLLNPNDVGTSPSFKLFKTIKYKGDHAEMLVLWKARTLNWEGEKRLPASQVLALLFHGGDMENDDVDMQGAENSEAELDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQDPASAAASQANREEVDARSIFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLETEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRPNPSMGFRGRTPYAPPFAYSPYGYGKVPRFRMPMRYSPYY 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2651 331 Coils Coil 143 180 - -
Glsi11g2651 331 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 144 292 - -
Glsi11g2651 331 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 279 IPR000504 GO:0003723
Glsi11g2651 331 Gene3D - 133 284 IPR012677 -
Glsi11g2651 331 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 273 IPR000504 GO:0003723
Glsi11g2651 331 CDD RRM_II_PABPs 204 275 - -
Glsi11g2651 331 SUPERFAMILY RNA-binding domain, RBD 194 301 IPR035979 GO:0003676
Glsi11g2651 331 SMART rrm1_1 204 275 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2651 Glsi-ChrGlsi11 19255584 19263813 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2651 204 274 Eukaryotic Initiation Factors Gene Family AT2G36660 33.333 1.70e-07 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g2651 11 19255584 19263813 Glsi11g2651 11 19255584 19263813 CCT