Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2646 ATGGAGGATGAGAGAAATGTGGGGTGGATCTCTGCTCAGGCGCAAGTTCCAAGTTATAGACGCACACACAGAGAGCTCGTCGCGGCGCGAGCAGGAGATAACAAGATGAAGTTCAACATTGCAAATCCCACCACCGGATGCCAGAAGAAGCTCGAGATCGATGACGATCAGAAGCTACGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTTAATGGTGACGCACTGGGTGAGGAATTTAGAGGCTATGTCTTCAAGATTACGGGAGGTTGTGACAAGCAAGGATTTCCTATGAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGTCTCTTGCTTCATAGAGGAACTCCATGCTTCCGTGGATACGGAAGGCGAAATGGAGAGCGCAGGAGGAAGTCTGTTCGTGGTTGCATTGTGAGTCCAGACCTTTCTGTTCTGAACTTGGTAATAGTGAAGAAGGGTGAAAATGATTTGCCGGGCCTGACAGACATTGAAAAGCCAAGGATGAGAGGTCCAAAGAGGGCATCCAAAATCCGGAAGCTGTTCAACCTGTCTAAGGAGGATGATGTGAGGAAGTATGTCAACACATACCGTCGAACCTTTACAACAAAATCTGGGAAAAAGGTTAGCAAAGCACCAAAGATACAGAGGCTGGTCACCCCTTTGACACTCCAAAGGAAACGTGCAAGGATTGCAGAGAAGAAGAAGAGAATTGCGAAGGCAAAATCAGAGGCAGCTGAGTACCAGAAACTCCTTGCCTCCAGGTTGAAGGAGCAAAGGGATCGTAGGAGTGAGAGTTTGGCAAAGAGGAGATCTAGGCTTTCTAGTGCTACTAAGCCAGCTGTTTCTGCATGA 855 0.4865 MEDERNVGWISAQAQVPSYRRTHRELVAARAGDNKMKFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVNGDALGEEFRGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDIEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARIAEKKKRIAKAKSEAAEYQKLLASRLKEQRDRRSESLAKRRSRLSSATKPAVSA 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2646 284 ProSitePatterns Ribosomal protein S6e signature. 87 98 IPR018282 GO:0003735|GO:0005840|GO:0006412
Glsi11g2646 284 SMART Ribosomal_S6e_2 36 163 IPR001377 GO:0003735|GO:0005840|GO:0006412
Glsi11g2646 284 MobiDBLite consensus disorder prediction 257 284 - -
Glsi11g2646 284 PIRSF RPS6e 36 284 IPR014401 GO:0003735|GO:0005840|GO:0006412
Glsi11g2646 284 MobiDBLite consensus disorder prediction 257 272 - -
Glsi11g2646 284 Coils Coil 224 251 - -
Glsi11g2646 284 Gene3D - 168 269 - -
Glsi11g2646 284 Pfam Ribosomal protein S6e 36 163 IPR001377 GO:0003735|GO:0005840|GO:0006412
Glsi11g2646 284 PANTHER 40S RIBOSOMAL PROTEIN S6 36 275 IPR001377 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2646 Glsi-ChrGlsi11 19208970 19211456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2646 36 284 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 71.888 1.83e-120 341