Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2642 ATGGCCACCGGCGATAATACGACCGATCCAAGTCACTGGGAAAAGCCTCTGGCGAGTTTTCTTATACGATATCACTCCGACCAGCTCCGCTCCATCGCTTCCTCTTCAGATTCCAAGCTCCATTACCCTCTCTACGTCGATTTTGCAGAGTTGATGGAGGATGACCCTCACTTTGCCCACCTTATCTTTACCGAACCCATTACGTATTTACAAATATTCGACCAGGCTGCTGTTTGGGCTCATAAAATCATATTGGGAGATCTGGGAGCAGAAAAGAATGGAGTTTGGAAAAAATCGATTCATGTCCGCATCAATACGAGTGGCTCTCCACTTGAATGCCCTGAGACTTTTCCGAGCATAGGACGTGTTAGAGTGAAGCACCGGGGAATTCTTCTAACTCTCAGAGGGACAGTAATCAGGTCAGGAGCAATAAAGATGCATGAAGGAGAGAGGGAGTACATGTGCCTAAAGTGCAAGAAGAGTTTCCTAGTTTATCCTGAGGTGGAAGCACGAAACTCCATAAGGCTACCTTCAATTTGCCAAGTTTCGAGGTCTAAGCCCTGTGGAGGCACAAAATTCCAGTATGTAGAGAATACTATAGTATGCCATGATTATCAAGAGATAAAAATTCAAGAAAGTACGCAGGTGCTTGGTGTTGGGGCTATTCCTCGTTCAATTCTTGTAATCTTGCAGGATGACCTTGCTGACATTGTTAAAGCTGGAGATAATGTAATTGTCACAGGGGTGTTAACAGCAAAATGGTCTCCAGAATTGAAGGATGTGCGCTGTGACCTTGATCCTGTATTAATAGCCAACCATGTAAGGAGAACAAATGAACTGAAGTCAGAAATTGATATTCCAGATGATACTGTAACAAAGTTCAAACAGTTCTGGGTCCACTTTAAAGATGCACCTTTAAAAGGGAGGAATGCTATTTTACGAGGAATTTGCCCACAAGTATTTGGACTGTTCACTGTCAAGCTGGCAGTTGCATTAACGCTTATTGGAGGAGTGCAACATGTCCATGCTTCTGGAACAAAGGTGCGAGGGGAGCCCCATTTACTCTTGGTTGGTGATCCTGGCACTGGAAAATCTCAGTTTCTGAAATTTGCTGCGAAATTGAGCAATAGATCTGTTATCACCACTGGTTTGGGAAGCACAAGCGCAGGATTGACTGTTACTGCAGTGAAGGATGGAGGCGAATGGATGTTGGAAGCTGGAGCCCTTGTTCTGGCAGATGGCGGGTTGTGCTGCATAGATGAGTTTGATAGTATGAGGGAACATGACAGAGCGACCATACATGAAGCCATGGAGCAGCAGACCATAAGTGTTGCCAAGGCTGGTCTTGTAACAACACTCAGCACTAGAACAACAGTATTTGGTGCTACCAATCCCAAGGGACATTATGATCCTGATCAACCCCTGTCTGTCAATACCACACTCTCTGGTCCTTTATTAAGCAGGTTTGATATAGTCCTTGTGCTCTTGGATACAAAGAATCCTGAATGGGATGCGGTTGTGTCATCTCATATTCTTAATGAGGTGGAACCAGATAGAACGGGGAAGGATGAAGATCTAGCAAATATCTGGCCTCTTCCTACACTCAAGAGGTATATTCACTTTGTGAAAGAAACCTTCCGACCAGTCCTTACTAGAGAGGCTGAGATTGTTATCTCCAGTTATTATCAACTCCAAAGGAAATCTGGAACTCATAATGCAGCTAGGACAACTGTCCGAATGCTGGAAAGTTTGGTACGCCTAGCTCAAGCTCATGCAAGGTTGATGTTCAGAAATGAGGTGACTCGGTTAGATGCCATCACAGCTATTTTATGCATAGAATCCTCAATGACTACCTCAGCTATAGTGGATTGCATTGGGAATGCTCTGCATTCCAATTTTACCGAAAACCCAGATCAGGAATGTATCCTTGCTAGCTATCTTTGCGTAATGGTAATTATTGGTTGGATATTGAGACATCTGGGCCGGCAGTTGAATGAAGACAATTCTGTTCACATGTAA 2019 0.4413 MATGDNTTDPSHWEKPLASFLIRYHSDQLRSIASSSDSKLHYPLYVDFAELMEDDPHFAHLIFTEPITYLQIFDQAAVWAHKIILGDLGAEKNGVWKKSIHVRINTSGSPLECPETFPSIGRVRVKHRGILLTLRGTVIRSGAIKMHEGEREYMCLKCKKSFLVYPEVEARNSIRLPSICQVSRSKPCGGTKFQYVENTIVCHDYQEIKIQESTQVLGVGAIPRSILVILQDDLADIVKAGDNVIVTGVLTAKWSPELKDVRCDLDPVLIANHVRRTNELKSEIDIPDDTVTKFKQFWVHFKDAPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVHASGTKVRGEPHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTTVFGATNPKGHYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILNEVEPDRTGKDEDLANIWPLPTLKRYIHFVKETFRPVLTREAEIVISSYYQLQRKSGTHNAARTTVRMLESLVRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDCIGNALHSNFTENPDQECILASYLCVMVIIGWILRHLGRQLNEDNSVHM 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2642 672 SUPERFAMILY Nucleic acid-binding proteins 41 258 IPR012340 -
Glsi11g2642 672 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 318 625 IPR027417 -
Glsi11g2642 672 Pfam MCM P-loop domain 310 513 IPR001208 GO:0003677|GO:0005524|GO:0032508
Glsi11g2642 672 Gene3D - 123 252 IPR012340 -
Glsi11g2642 672 FunFam Probable DNA helicase MCM9 286 620 - -
Glsi11g2642 672 CDD MCM9 311 615 - -
Glsi11g2642 672 ProSiteProfiles MCM family domain profile. 308 511 IPR001208 GO:0003677|GO:0005524|GO:0032508
Glsi11g2642 672 SMART mcm 116 617 IPR031327 GO:0003677|GO:0005524|GO:0032508
Glsi11g2642 672 Pfam MCM OB domain 123 251 IPR033762 -
Glsi11g2642 672 PRINTS Mini-chromosome maintenance (MCM) protein family signature 485 493 IPR001208 GO:0003677|GO:0005524|GO:0032508
Glsi11g2642 672 PRINTS Mini-chromosome maintenance (MCM) protein family signature 407 421 IPR001208 GO:0003677|GO:0005524|GO:0032508
Glsi11g2642 672 PRINTS Mini-chromosome maintenance (MCM) protein family signature 349 364 IPR001208 GO:0003677|GO:0005524|GO:0032508
Glsi11g2642 672 PRINTS Mini-chromosome maintenance (MCM) protein family signature 435 448 IPR001208 GO:0003677|GO:0005524|GO:0032508
Glsi11g2642 672 Pfam MCM AAA-lid domain 534 615 IPR041562 -
Glsi11g2642 672 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 28 622 IPR031327 GO:0003677|GO:0005524|GO:0032508
Glsi11g2642 672 SMART AAA_5 350 499 IPR003593 GO:0016887
Glsi11g2642 672 Gene3D - 286 621 IPR027417 -
Glsi11g2642 672 Gene3D - 147 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2642 Glsi-ChrGlsi11 19179610 19192581 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2642 5 643 Core DNA Replication Machinery Family AT2G14050 75.701 0.0 1006