Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2626 ATGTCTGAGCTGGAAGCTTCTCGCTCTGAGAAGAAGAAGAAGAAGCACCGCAACAAAGATGAAACACCTGCTGATCTTGCCGATTCTGACCCCACCCAGAAAGTCGCCGACTTCATGATCAAACCCCAGAGCTTCACTCCACCCATTGACACCTCTCAGTGGCCGATTCTCCTCAAGAACTATGACCGCCTCAACGTGCGAACCGGGCACTACACTCCCATTCCCTCTGGCTTCTCTCCCCTCAAGCGCCCTCTTCCGGAGTACATCAAGTACGGTATTATGAATCTTGATAAGCCCGCGAACCCGTCTTCCCATGAGGTCGTCGCTTGGATTAAACGGATCCTCCGGGTGGAGAAAACGGGTCATAGTGGTACCCTCGATCCCAAGGTCACTGGGAACCTCATAGTTTGCATTGATAGAGCCACCCGTTTGGTGAAATCGCAACAGGGTGCTGGAAAAGAGTATGTCTGTGTTGCCCGTTTGCACTCTGCGGTTCCGGAGGTTGCAAAGGTGGTTCGAGCGCTCGAAACGCTTACTGGAGCAGTGTTTCAGCGGCCACCATTGATTTCTGCTGTGAAGAGGCAGCTTAGGATCAGGACTATATATGAAAGTAAGCTTCTTGAGTATGACTCAGATAAGCATTTGGTTGTGTTTTGGATTTCCTGTGAGGCAGGTACGTATGTGAGGACTCTGTGTGTTCATTTGGGTTTGATTCTTGGTGTTGGAGGGCATATGCAGGAGCTTAGAAGGGTGCGTTCGGGTATTTTGGGTGAGAAAGATAATATGGTCTCTATGCATGATGTGTTGGATGCTCAATGGGTTTATGATAATTATAGGGATGAGAGTTATCTGAGAAGGGTTGTTATGCCACTGGAAGTGATCTTGACGAGCTATAAGAGATTGGTTGTGAAGGATTCCGCTGTTAATGCAATTTGTTATGGAGCAAAGCTGATGATTCCTGGCTTACTTAGGTTCGAGAATGATATTGAGGTGGGGGAGGAAGTGGTGCTCATGACTACCAAAGGTGAAGCAATTGCCTTGGGAATCGCAGAGATGACTACTGCAGTAATGGCTACTTGTGATCATGGTGTGGTAGCAAAGATTAAAAGAGTGGTTATGGATCGAGATACCTATCCAAGGAAATGGGGTTTAGGCCCAAAGGCATCCATGAAGAAGAAATTGATTGCAGAAGGAAAGCTAAATAAGCATGGGAAGCCAAATGAGAATACGCCTCAAGAGTGGCTGAGGAATCTGGTTTTACCAACTGGTGGGGATTCTATCATTGCGGGTATGGCAGCTTCATCTGAACCAGATGCAGTCAAGAAGGATACCGCTTTAGTGGAAAAGGAAAAGGTTGAGAGTAACGAGGATGGGAAAGGGCGTAAAAGAAAAGAAGTTGAAATCAATGATAGCCCCGTTCCTCTCCCCACTAAGAAGGCAAAATATGAACAAGTTGAAGAAGCTGAAAGGGAAGAAACAGTGAAGATCAAGAAGGTAAAAGAAGACCTTGTGGAGATTGAAGTTGATAAGAAAGAGAAAAAGAAAAAGAAAAAGAAGGATAAAGAGACTAATGAAGTGCCATCTTCCGATGAGGAGAAAGCTGAAAAAGAGAAGAAAAAGAAGCACAAAGAAAAGGTCGAAGCCACTTCACCTGATTTGGAGAAGTCTGAGAAGAAGAAAAAGAAGCACAAAGAAAAGGCCAAAGCCATTTCACCTGATATAGAGAAATCTGAGAAGAAGAAAAAGAAAAAGGACAAAGAGGCTGAAAATAATGGTAGTGATACGGAGATCAATAATGGAAAGGCTGATGGTGATGCTCATCAAAGTGAGAAGAAGAAGAAGAACAAGCATCATAAGAAGAAGAATGAAGATGCAGAGGAAGAATAG 1887 0.4483 MSELEASRSEKKKKKHRNKDETPADLADSDPTQKVADFMIKPQSFTPPIDTSQWPILLKNYDRLNVRTGHYTPIPSGFSPLKRPLPEYIKYGIMNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPEVAKVVRALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDSDKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVSMHDVLDAQWVYDNYRDESYLRRVVMPLEVILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPKASMKKKLIAEGKLNKHGKPNENTPQEWLRNLVLPTGGDSIIAGMAASSEPDAVKKDTALVEKEKVESNEDGKGRKRKEVEINDSPVPLPTKKAKYEQVEEAEREETVKIKKVKEDLVEIEVDKKEKKKKKKKDKETNEVPSSDEEKAEKEKKKKHKEKVEATSPDLEKSEKKKKKHKEKAKAISPDIEKSEKKKKKKDKEAENNGSDTEINNGKADGDAHQSEKKKKNKHHKKKNEDAEEE 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2626 628 Coils Coil 482 516 - -
Glsi11g2626 628 SMART pua_5 299 373 IPR002478 GO:0003723
Glsi11g2626 628 Gene3D Pseudouridine synthase 84 290 - -
Glsi11g2626 628 Pfam TruB family pseudouridylate synthase (N terminal domain) 112 228 IPR002501 GO:0006396
Glsi11g2626 628 Coils Coil 529 549 - -
Glsi11g2626 628 ProSiteProfiles PUA domain profile. 298 373 - -
Glsi11g2626 628 CDD PseudoU_synth_hDyskerin 90 272 - -
Glsi11g2626 628 CDD PUA_Cbf5 297 371 - -
Glsi11g2626 628 MobiDBLite consensus disorder prediction 1 33 - -
Glsi11g2626 628 MobiDBLite consensus disorder prediction 480 559 - -
Glsi11g2626 628 Pfam PUA domain 299 371 IPR002478 GO:0003723
Glsi11g2626 628 Pfam DKCLD (NUC011) domain 51 108 IPR012960 -
Glsi11g2626 628 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 58 383 IPR004802 GO:0006396
Glsi11g2626 628 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 10 586 IPR004802 GO:0006396
Glsi11g2626 628 NCBIfam uncharacterized domain 2 294 370 IPR004521 GO:0003723
Glsi11g2626 628 SUPERFAMILY Pseudouridine synthase 51 296 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Glsi11g2626 628 MobiDBLite consensus disorder prediction 449 469 - -
Glsi11g2626 628 MobiDBLite consensus disorder prediction 1 27 - -
Glsi11g2626 628 Coils Coil 608 628 - -
Glsi11g2626 628 Gene3D PUA domain 51 382 IPR036974 GO:0003723
Glsi11g2626 628 SUPERFAMILY PUA domain-like 298 379 IPR015947 -
Glsi11g2626 628 MobiDBLite consensus disorder prediction 449 628 - -
Glsi11g2626 628 Pfam tRNA pseudouridylate synthase B C-terminal domain 229 295 IPR032819 -
Glsi11g2626 628 SMART DKCLD_2 50 108 IPR012960 -
Glsi11g2626 628 MobiDBLite consensus disorder prediction 567 592 - -
Glsi11g2626 628 FunFam H/ACA ribonucleoprotein complex subunit CBF5 84 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2626 Glsi-ChrGlsi11 19000088 19001974 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2626 1 481 NAC Transcription Factor Family AT3G57150 79.002 0.0 755