Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2609 ATGATCAGATTCTTGGTAAGGAATCCTTCTTTTTCATCTTTTGCAGAATCAAAACGCTTATCTCTAGCTCGATCTGGTCTTTTTCTTCTCTCGGATAATATTCTCCCTTCTCTTAGGCGTAGGATTGAGAATCACCCCTGGGACTTGGCATATAAAACTCATGAACTCAGTCAGTTGAAGGGGGAAAAGCTGCAAGGATTGATGTTACAAGAATTACAGAAACTAGAGGAACAACATGAAAGAGGTTTAAACCGTGTTCTAAAAGCAAAGGATGGGAGAATTGTGAAAGAGGGTTTGGTTTCAGATGATCAGGTTCTTGGGAAAATGACGAGACACAAGATAGAGATCAAGAAGATAGACGACAAAACAGCAAGGCAGGTGACTTTTTCCAAGAGGAGGAGAGGGCTTTTCAAGAAGGCACGCGAGCTTTCAACTCTCTGTGATGCTGAAATAGCTCTTGTAGTCTTTTCTGCTTCTGGCAAGCTCTTTGAATATGCTAGCTCGAGCATGCAGCAGGTAATTGAAAGGCATAATATTCTGCATTCGGATATTATTGACAGCCTAGACAATCCGTTGCAGATTGAGAATCACACCTACAACTTGCTGAGCAAGGATCTAGCATATAAAACTCATGAATTGAGTCAGTTGAAGGGAGAAAAGCTGCAAGAATTGACTTTACAAGAATTACAGAAACTAGAGGAACTACTTGAAAGAGGTTTAACCCGTGTTCTAAAAGAAAAGGATGGAAGATTTGTGAAAGAGATAAGTTTGCACAAGAAAAAGGGAGTCCAACTGATGGAAGAGAACCGGAAACTGAAACAGGGTCTTGCACATGATCATGAACAAGGCCAGTCATACGAGTCAAACATCATTTGCAGCTCATCCAGTTGTCCTCGTGAAGACTATGATTCTTCTGACAAGTTTGGGTTGCTTTTGTTTAAATAA 945 0.4053 MIRFLVRNPSFSSFAESKRLSLARSGLFLLSDNILPSLRRRIENHPWDLAYKTHELSQLKGEKLQGLMLQELQKLEEQHERGLNRVLKAKDGRIVKEGLVSDDQVLGKMTRHKIEIKKIDDKTARQVTFSKRRRGLFKKARELSTLCDAEIALVVFSASGKLFEYASSSMQQVIERHNILHSDIIDSLDNPLQIENHTYNLLSKDLAYKTHELSQLKGEKLQELTLQELQKLEELLERGLTRVLKEKDGRFVKEISLHKKKGVQLMEENRKLKQGLAHDHEQGQSYESNIICSSSSCPREDYDSSDKFGLLLFK 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2609 314 ProSitePatterns MADS-box domain signature. 111 165 IPR002100 GO:0003677|GO:0046983
Glsi11g2609 314 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 118 165 IPR002100 GO:0003677|GO:0046983
Glsi11g2609 314 SMART madsneu2 109 168 IPR002100 GO:0003677|GO:0046983
Glsi11g2609 314 PRINTS MADS domain signature 131 146 IPR002100 GO:0003677|GO:0046983
Glsi11g2609 314 PRINTS MADS domain signature 146 167 IPR002100 GO:0003677|GO:0046983
Glsi11g2609 314 PRINTS MADS domain signature 111 131 IPR002100 GO:0003677|GO:0046983
Glsi11g2609 314 PANTHER SERUM RESPONSE FACTOR HOMOLOG 111 270 - -
Glsi11g2609 314 ProSiteProfiles MADS-box domain profile. 109 169 IPR002100 GO:0003677|GO:0046983
Glsi11g2609 314 SUPERFAMILY SRF-like 110 178 IPR036879 GO:0003677|GO:0046983
Glsi11g2609 314 Pfam K-box region 197 275 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi11g2609 314 CDD MADS_MEF2_like 111 177 IPR033896 GO:0000977|GO:0045944
Glsi11g2609 314 Gene3D - 121 189 IPR036879 GO:0003677|GO:0046983
Glsi11g2609 314 ProSiteProfiles K-box domain profile. 192 282 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi11g2609 314 FunFam Transcription factor, MADS-box 120 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2609 Glsi-ChrGlsi11 18802961 18818667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2609 48 97 MADS-box Gene Family AT2G22540 48.000 1.75e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Glsi11g2609 K-box 2.9e-11 No_clan