Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2598 ATGGATAACGTGAATCCGCAGCCACTTCAAGCACGGCCATATGAGGAAGTAGAAAACCAGCTGGTGGAGACTCCCATGAAGGTGGATGGGATCGAGGGTGGATTAAACAACCAGTATGGTAATGGAGGTCGTGACGAGGTCACTGATGGGGTGCAAGAAGTTCGAGGGAGTGCTGGAGTATCTGGGACTAATGGTTGTTCTATGCTGAATCGAACCAGTGAGCTCACCATTGCGTTTGAAGGCGAGGTCTATGTTTTCCAGGCTGTTACGCCAGAAAAGGTTCAGGCTGTATTATTACTCTTGGGAGGGTGTGAGATGCCCAATAGTGTCCCCAGCTCTGATTTTTTACTGCAACAGAACTGTCAGAACTTTAGGGGAATAAATGATGCTTCCCGAGGTTCAAAACTTTCGCGGAGAACTGCATCTCTTGTTAGGTTCCGTGAAAAGCGGAAAGAGAGATGCTTTGACAAGAAAATTCGTTACACCTGTCGTAAAGAGGTTGCTCAAAGGATGCATCGTAAGAATGGACAGTTTGCATCATTGAAGGAAGACTGCAAATCTGCTGCTGAAAACTGGGATTCAAGCAATGCTGCTCCTTGTCCAGAACCTACATGCCAGCATTGTGGAATCAGTGAGAAGTCTACTCCAGCTATGCGGCGAGGACCAGCAGGTCCAAGATCTCTGTGCAATGCCTGTGGGCTTATGTGGGCAAATAAGGGAACCCTGAGAGATCTCAGCAAAACAGGAAGGACTACTTCTCTTGAACAACACGAACTGGATGCGTCAGCTGATATAAAGCCTTCCACGACAGAACCAGAAAATTCTTGTACTGACCAGGATGAAGTGGGAAGCCCAGAGGAGTGTAAGCCTTTACCATTAGATTCAAGGCAATCACCCAAGAGGACAAATGAGCAGTATATGCTTGAAACGGCTGAAGCAGTTACTGACAACTTATCTATCCAAGTGGAGAATTCTGCTGTTAATCTGCATGAGCGGGACACACTAGAGGATCTTGCTGATGCATCCTGTACAGAATTTGAGATTCCTGCAGGTTTTGATGAGCAGATGTGCAGTGCTGGTTCAACTAACATTGGACTTCCAGAGATGATTTATGTTTTTACAGACATTGTTTCTGGAAGCAACTTGGATTATGATTGGAGACATACAGTTTTTCTTCTCAGGAGAGTTTCTGTACATCCCATTGGAACTGTATGTGATTTATATAATGTGAATAGTTTCAGTTATTTTCCTTTACAGTTGCTGTTTTCAGTCCACTCTTAA 1281 0.4489 MDNVNPQPLQARPYEEVENQLVETPMKVDGIEGGLNNQYGNGGRDEVTDGVQEVRGSAGVSGTNGCSMLNRTSELTIAFEGEVYVFQAVTPEKVQAVLLLLGGCEMPNSVPSSDFLLQQNCQNFRGINDASRGSKLSRRTASLVRFREKRKERCFDKKIRYTCRKEVAQRMHRKNGQFASLKEDCKSAAENWDSSNAAPCPEPTCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKTGRTTSLEQHELDASADIKPSTTEPENSCTDQDEVGSPEECKPLPLDSRQSPKRTNEQYMLETAEAVTDNLSIQVENSAVNLHERDTLEDLADASCTEFEIPAGFDEQMCSAGSTNIGLPEMIYVFTDIVSGSNLDYDWRHTVFLLRRVSVHPIGTVCDLYNVNSFSYFPLQLLFSVHS 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2598 426 CDD ZnF_GATA 204 247 IPR000679 GO:0006355|GO:0043565
Glsi11g2598 426 ProSiteProfiles Tify domain profile. 68 103 IPR010399 -
Glsi11g2598 426 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 202 251 - -
Glsi11g2598 426 MobiDBLite consensus disorder prediction 250 264 - -
Glsi11g2598 426 Pfam GATA zinc finger 205 241 IPR000679 GO:0006355|GO:0043565
Glsi11g2598 426 Pfam tify domain 72 102 IPR010399 -
Glsi11g2598 426 ProSitePatterns GATA-type zinc finger domain. 205 232 IPR000679 GO:0006355|GO:0043565
Glsi11g2598 426 SMART GATA_3 199 252 IPR000679 GO:0006355|GO:0043565
Glsi11g2598 426 SMART tify_2 68 103 IPR010399 -
Glsi11g2598 426 MobiDBLite consensus disorder prediction 249 300 - -
Glsi11g2598 426 ProSiteProfiles CCT domain profile. 139 181 IPR010402 GO:0005515
Glsi11g2598 426 PANTHER GATA TRANSCRIPTION FACTOR 28 4 347 IPR045280 GO:0006355
Glsi11g2598 426 Pfam CCT motif 139 180 IPR010402 GO:0005515
Glsi11g2598 426 Gene3D - 202 261 IPR013088 GO:0006355|GO:0008270
Glsi11g2598 426 MobiDBLite consensus disorder prediction 267 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2598 Glsi-ChrGlsi11 18697942 18704162 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2598 33 253 Tify Gene Family AT1G51600 49.153 2.86e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi11g2598 CCT 3e-14 CL0281