Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2584 ATGGGTTCCTTCTGGCTTCTCAAACTCGCCCTGAAATGCATCTATTTTCTTTCATGGCCTCTCCTTGCTTTGGGGTACCCTCTATGTGCTTCCATCCGAGCACTTGAGACTGATAGCCATTCAGACACAAGGAGTTTGATCTCTTATTGGATACTTTTCTCATTAATATACCTCTTTGAGTATGCATTCCTGAAGCTTCTTCAATGGTTTCAGTATTGGTCTCACATTAAGCTAATGATCATCATCTGGCTCGTGATACCGGACTTCAGAAGAGCTTCTTATGTCTACGATCACCTTGTTCATTCATGCATCTCCATGAATCTCCAAGAAACCATAAGCAGGTTCATGAACTGGAAGAAGTTATTTGTCAAGAGAGAAATTTTTCTACTGCAGGCCGAGGACTACATAAAAGAGAATGGAACTGAAGCCTTAGAGAAACTCATTGCTAGCAAGAGCACAATGCAAAATCTCGATGCAGAAGCAGTGAAAGCAGTTCCGGCAACAGAGAAGAATGAAGAGCAACAGACAATAAGAACAAGGCTTGAAATGGAACAGAAAGACATCAGAGATTTGGAGATGATTGAAAAGGTGGAAGTTTCTAAAGACAAGCAAGCTAATTCTTCTGCGCAAAGCCTTGAACTGAAAGAGAACACACCAACTGTCAAAGTAGAAACTGAAGGAATTGCAGGGAAAGACACAGCAGGGGGAGAGTCTCAGAGTTCTGCATCTAAGAAAGTACAGAAAGAGTGGACTTGTGCTTTATGTCAGGTGACAACAACAAGTGAGAAAACCTTGAATATGCACCTCCACGGGAAGAAACACACGGCTACTTGTGAAGCACTGAAAGCAAAGAACCAATCTGTTCCGGCGAAAAACTTCACCGGGGCGAAGAAAAATGACAAGTTAAATGAAGAACCAAAGATAGTATTTGCCAATGCATCGAAACCACAGAAGAACACAGCCAATCAGCATGCTAAAATAGAGCAAAAAAAGGTTAAAATTTCAAACGTACAGGAAAATTCTCAGCTCAGTGGTGCACCAAAACAGAGAATAATCAAAGATAAAGAGAATAAAAGCAAAGGCAATAAACAAGGTGTTCATCCATCTTGTGGAATGAACGATTCCAGATTAAGATGTGGAATCTGTGATGTACATTGCAATAGTGAGAGTGACTTGGCCTCTCATTTGAATGGGAGGAGGCACTTGTCTACAATTAAGGAACAGGTTCTTAAGTTATAA 1239 0.4084 MGSFWLLKLALKCIYFLSWPLLALGYPLCASIRALETDSHSDTRSLISYWILFSLIYLFEYAFLKLLQWFQYWSHIKLMIIIWLVIPDFRRASYVYDHLVHSCISMNLQETISRFMNWKKLFVKREIFLLQAEDYIKENGTEALEKLIASKSTMQNLDAEAVKAVPATEKNEEQQTIRTRLEMEQKDIRDLEMIEKVEVSKDKQANSSAQSLELKENTPTVKVETEGIAGKDTAGGESQSSASKKVQKEWTCALCQVTTTSEKTLNMHLHGKKHTATCEALKAKNQSVPAKNFTGAKKNDKLNEEPKIVFANASKPQKNTANQHAKIEQKKVKISNVQENSQLSGAPKQRIIKDKENKSKGNKQGVHPSCGMNDSRLRCGICDVHCNSESDLASHLNGRRHLSTIKEQVLKL 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2584 412 SUPERFAMILY beta-beta-alpha zinc fingers 236 285 IPR036236 -
Glsi11g2584 412 PANTHER OS06G0651300 PROTEIN-RELATED 190 408 - -
Glsi11g2584 412 SMART c2h2final6 250 274 IPR013087 -
Glsi11g2584 412 SMART c2h2final6 377 401 IPR013087 -
Glsi11g2584 412 Gene3D Classic Zinc Finger 346 408 - -
Glsi11g2584 412 Gene3D Classic Zinc Finger 231 280 - -
Glsi11g2584 412 MobiDBLite consensus disorder prediction 205 242 - -
Glsi11g2584 412 SUPERFAMILY beta-beta-alpha zinc fingers 368 408 IPR036236 -
Glsi11g2584 412 MobiDBLite consensus disorder prediction 337 370 - -
Glsi11g2584 412 Pfam Zinc-finger of C2H2 type 250 274 - -
Glsi11g2584 412 Pfam Zinc-finger of C2H2 type 378 401 - -
Glsi11g2584 412 Pfam TB2/DP1, HVA22 family 27 102 IPR004345 -
Glsi11g2584 412 SMART ZnF_U1_5 247 281 IPR003604 GO:0003676|GO:0008270
Glsi11g2584 412 SMART ZnF_U1_5 374 408 IPR003604 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2584 Glsi-ChrGlsi11 18555242 18558716 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi11g2584 TB2_DP1_HVA22 6e-20 No_clan