Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2580 ATGGGAAGAGGAAAAATTGCGATTCGAAGAATCGACAATTCAACGAGTAGACAAGTAACTTTCTCAAAAAGAAGAAATGGATTGTTGAAGAAAGCAAAAGAATTGTCAATTCTTTGTGATGCTGAGGTTGGATTGATGGTGTTCTCAAGCACAGGGAAGCTCTATGACTATGCAAGCACAAGCATGACAAGTGTGATTGAGCGCTACAGCAAATTAAAAGAGGAACAACATCATCGGCTTATGAATCCTGCCTCAGAAGTCAAGTTTTGGCAGAGAGAAGCAGCGAGCTTGAGGCAACAACTGCAGTACTTACAAGAATGCCACAGGCAACTGATGGGTGAAGAACTTTCTGGTTTGGGCATTAAAGAACTACAAAATCTGGAAAACCAACTGGAGATGAGTTTAAAGGGTGTCCGTATAAAAAAGGACCAAATTTTAACTGATGAGATTAAAGAACTACACCAAAAGGGAAATCTCATTCATCAAGAAAATATACAACTCTACAAAAAGATAGACACCATCCACAAAGAAAATGCAGAGCTACAAAAGAAGGTTTACAAAACAAGAAATATGAATGAAGAAAATGAGACATCCAATCCTCCATACACTATCAACAATGGATATAACTTACACGTGCCTATCTGTCTCCAGCTAAGCCAACCACAGCCTCAGTACAGTGAACAACCAGCCACAGCAATGAAACTGGGATTACAGCTGCATAAGCCAAAGATGGCTGACAACCAGGGATGGTTGTCTGACAACAAGCTGTCCACAACTAGGCCCTAA 786 0.4033 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLMVFSSTGKLYDYASTSMTSVIERYSKLKEEQHHRLMNPASEVKFWQREAASLRQQLQYLQECHRQLMGEELSGLGIKELQNLENQLEMSLKGVRIKKDQILTDEIKELHQKGNLIHQENIQLYKKIDTIHKENAELQKKVYKTRNMNEENETSNPPYTINNGYNLHVPICLQLSQPQPQYSEQPATAMKLGLQLHKPKMADNQGWLSDNKLSTTRP 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2580 261 Coils Coil 121 141 - -
Glsi11g2580 261 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Glsi11g2580 261 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi11g2580 261 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Glsi11g2580 261 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Glsi11g2580 261 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Glsi11g2580 261 Coils Coil 176 196 - -
Glsi11g2580 261 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Glsi11g2580 261 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Glsi11g2580 261 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Glsi11g2580 261 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Glsi11g2580 261 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Glsi11g2580 261 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi11g2580 261 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Glsi11g2580 261 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 194 - -
Glsi11g2580 261 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2580 Glsi-ChrGlsi11 18496507 18521518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2580 1 240 MADS-box Gene Family AT2G14210 63.071 4.27e-94 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Glsi11g2580 K-box 2.9e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g2580 11 18496507 18521518 Glsi11g2580 11 18496507 18521518 CCT
Glsi11g2580 11 18496507 18521518 Glsi11g2580 11 18496507 18521518 ECH