Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2551 ATGGAGGATCCTACCTTTCTCCATCAATGGCACTCGAGCTCCCTTGATGACCCTAGTTTACTGCCAATAGCTGCTGCTTTTGGAGAGACCTTACATCAACAACAACAACATTCATTCTCTAATGCAAGCTTCAACCCCAAAAATTCCATGGAAACCACACTTACTGGCATTGAAAGACCCCAAAAGCAGATTAAAACCAACAGTTGGAGTCCCGACAAAAATAATCAGAATCAGACAGTAGACACAGATTATGCCTCTTGTCCTAATCTTCTTTCGTTTGTCAATTCAAATTACATAAGTCAACTAGGAATCGTGAAGCCCAAGGAGGAGATAGTATGTCCTAAAATCAATAGTACAATTCCTTCAGACATGTTAGCCTCTCAAGGACCCTTGGAAAATCATAACTATGTCTTCAAGGCCAGCCAAGATGCTAGAAAGATTGGGACAGGTCCTAAAATTTCTCATCCTCAAGACCACATAATAGCAGAAAGGAAGCGGCGAGAGAAGCTCAGCCAGCGGTTCATCGCTCTATCTGCCCTTGTTCCTGGCCTAAAGAAGATGGATAAGGCTTCTGTTCTTGGAGATGCTATCAAGTACTTGAAGCAACTGCAAGAGAAAGTGAAGGCTCTTGAAGAGGAACAGACTAGAAGAAACACCGTGGAATCTGTAGTGATTGTGAAGAAATCTCAATTGTTTGCGGATGCAGGCGACTCTTCTTCAGATTCTGGTGGTCCCTTTGATGAACCACTGCCTGAAATTGAAGCTAGATTTTGCGAAAGAAACGTTCTCATAAGAGTTCACTGTGAGAAAAGGACAGGAGTTATAGAAAAAACAATGAGGGAAATAGAGAAACTCCATCTAATAGTCACCAATAGCAGTGTCATGACATTTGGGAGTTCTGCTCTAGATATAACAATAATTGCTCAGATGGATATGGAATTTTGCATGACACTAAAGGATCTTGTAAGAAGCTTACGCTCAGCTTTGGAATGTTTCACGTGA 1002 0.4162 MEDPTFLHQWHSSSLDDPSLLPIAAAFGETLHQQQQHSFSNASFNPKNSMETTLTGIERPQKQIKTNSWSPDKNNQNQTVDTDYASCPNLLSFVNSNYISQLGIVKPKEEIVCPKINSTIPSDMLASQGPLENHNYVFKASQDARKIGTGPKISHPQDHIIAERKRREKLSQRFIALSALVPGLKKMDKASVLGDAIKYLKQLQEKVKALEEEQTRRNTVESVVIVKKSQLFADAGDSSSDSGGPFDEPLPEIEARFCERNVLIRVHCEKRTGVIEKTMREIEKLHLIVTNSSVMTFGSSALDITIIAQMDMEFCMTLKDLVRSLRSALECFT 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2551 333 Coils Coil 193 220 - -
Glsi11g2551 333 CDD bHLH_AtNAI1_like 154 229 - -
Glsi11g2551 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 203 IPR011598 GO:0046983
Glsi11g2551 333 Pfam Helix-loop-helix DNA-binding domain 158 204 IPR011598 GO:0046983
Glsi11g2551 333 Gene3D - 154 226 IPR036638 GO:0046983
Glsi11g2551 333 PANTHER BHLH TRANSCRIPTION FACTOR 33 329 - -
Glsi11g2551 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 216 IPR036638 GO:0046983
Glsi11g2551 333 SMART finulus 160 209 IPR011598 GO:0046983
Glsi11g2551 333 MobiDBLite consensus disorder prediction 56 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2551 Glsi-ChrGlsi11 18078236 18080085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2551 154 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 61.538 1.73e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi11g2551 HLH 2.4e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g2551 11 18078236 18080085 Glsi11g2551 11 18078236 18080085 CCT
Glsi11g2551 11 18078236 18080085 Glsi11g2551 11 18078236 18080085 ECH