Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2533 ATGGGTTCTCCGGGAAACCCCAATTGGGTATTTGATTATGGTTGTATAGAGGACATTCCCGTCCCCGGCGGTGACCTTCCGCCTCTGGACCCGCCCAATTTTTCTTGGCCCTCTCATTCCCTCACCGCTCCTCAGGCTGATTTCAGTGTGGAGTTAGATGATTCATATGGGAACCCAGATGGTTTCAACGAAGCCGGGTGTAGAAAACGTCTAAGGTCAGGATCCAGCAATTCATATGGCTCGAAAGCATGTAGAGAGAAATTGCGGAGGGATCGACTGAATGACAGGTTCCTAGAACTGGGGTCTATCCTCAATCCTGGCAGGCCTGCCAAAATGGACAAGGCTGTTATATTAAGCGATGCAGTTCGGATACTCTCTCAGCTACAAGGGGAGACTCAGAAGCTTAGAGAGTCCAACGAGAATCTGCAGGAGAAAATTAATGAATTGAAGGCTGAGAAGAATGAGCTCCGTGATGAGAAGCAGCGACTGAAGGTAGAGAAAGAGAAAATTGAGCAGCAACTTAAAGCCTTGAGTTCACAACCAGGCTTCATGCCCCATCCTCCCACCGTCCCATCTCCATTTCCTGCTCCAGGGCAAGTTCTTGGCAGGAAGCTGGTGCCATTCGTTGGCTACCGAGGAGTTTCAATGTGGCAGTTCTTGCCCCCAACTGCTGTTGATACCTCACAGGACCATGTTCTCCGTCCCCCAGTTGCATAG 717 0.5021 MGSPGNPNWVFDYGCIEDIPVPGGDLPPLDPPNFSWPSHSLTAPQADFSVELDDSYGNPDGFNEAGCRKRLRSGSSNSYGSKACREKLRRDRLNDRFLELGSILNPGRPAKMDKAVILSDAVRILSQLQGETQKLRESNENLQEKINELKAEKNELRDEKQRLKVEKEKIEQQLKALSSQPGFMPHPPTVPSPFPAPGQVLGRKLVPFVGYRGVSMWQFLPPTAVDTSQDHVLRPPVA 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2533 238 SMART finulus 83 134 IPR011598 GO:0046983
Glsi11g2533 238 Gene3D - 80 157 IPR036638 GO:0046983
Glsi11g2533 238 PANTHER BHLH TRANSCRIPTION FACTOR 7 238 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Glsi11g2533 238 CDD bHLH_AtILR3_like 82 157 - -
Glsi11g2533 238 Coils Coil 125 180 - -
Glsi11g2533 238 Pfam Helix-loop-helix DNA-binding domain 81 129 IPR011598 GO:0046983
Glsi11g2533 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 77 128 IPR011598 GO:0046983
Glsi11g2533 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 79 149 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2533 Glsi-ChrGlsi11 17965788 17967784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2533 1 238 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 55.510 1.86e-88 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi11g2533 HLH 2.6e-10 No_clan