Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2520 ATGGTACAAGGGAGAGTAAGAGTATCTACACTGATTTTGCTAATTACTGGAATTTACTCTACCTTTCTATGGGCTAAAATCATGAGCATAGCAAAATGGGTAGTCATTTTGATGATTCTTCCCCATGTCTCTATTTGGGTTTGCTCAGCTTCTGACACCATAACCATTGACAAACCCATCAGTGATGGTGAGTTTCTGATTTCCAAAGCAGAAAAATTTACTCTCGGGTTCTTCAGTCCTGGCAAATCCTCCTACCGCTATTTAGGAATTTGGTATAAAAACATACCAGAGCTAACTGCAGTTTGGGTTGCAAACAGAGACAACCCCATCAACGATACTTCTGGTGTTCTCTCCCTTAACCCAGACGGAAATCTGAGACTCCATCACAACCAGAGCAATTTCCCCATCTGGTTTACCAATGTTTCTGTCAGTCCCCCAAGCATCACAGTTATAGCTCAACTCTCCGATGTAGGTAACCTTCTTCTTACTCAGAACAACTCCAAAACCACCATCTGGCAGAGCTTTGATCATCCCACAGACACCATGCTTCCATATGTAAAACTGGGTATCAACAGAAGAACTGGTCAGAGCTGGATCTTACGGTCCTGGAAAACAGAAGATGACCCAGGCACTGGATCTTTCATGTTTAAATTCAACACTAGTGGGAAAAGCCAATTGTTCATGTATAAGCAGAACCTGCCGTGGTGGCGAGGTGGATCATTTAATGGAGAAATATTTGTAGGTATGCCGTACATGAAACGTGCTGTAACCACTTTTAATGTTTCTTTTGTGGACGATGATGATCAGGTGGCACTTGCATATAACATGTTCGACAAATCTATCATAGCCAGAGTAGTAGTGCATCAGTTAGGATTCTTGCAAGTATTAACGTGGGATTCCCAGAAAAACCTATGGAATAGGTTCTGGTCTTCCCCACAAGTGACATGTGACAACTATGGAACATGCGGGTCGAACAGTAATTGTGACCCACTAAACTATGAAGACTCTCTGTGTTCATGTCTACCTGGGTTTGAACCCAGAAGCCCACATGATTGGTATCAGAACAAAGATACATCAGGGGGCTGTGTGAGGAAGAACAATGGACGATCCATTTGTCGGAATGGAGAAGGGTATGTTAGAGTAGAAAGTGTAAAGATTCCTGATACATCTATAGCAATTGCCAAAATGGGTCTCAATCTGCAACAATGTGAGCAGGAATGCTTGAGAAATTGTTCTTGCATGGCCTATGCAGCTGCGGATGTGAGAAATGGTGGAAGTGGGTGCTTGGCATGGTATGGGGCTCTAATGGACACACAGAAGTACACTGAACAAGGCCAGGATTTGTATGTACGTGTTGATGCTATTGAACTAGCGAACTATACCAACAGATCAAAGAGACAACTTGCTAAGAAGGGGATAGTGGAAATTTCTATTGCGTCTGTTGCAGCAATTGCTCTTTTCATTGCCTTATGCATCTACTGCTTTTGGAGGAAAAGACAAGATAGAATCAAAATGATGCACTATTTAAACCAAGACTCTTCAACAGAAGAGGAGAATAACAGAACACGTCCTAATTTACCATTTTTCGATCTCAAAACTATAATGGCTGCTACAAACAATTTTGCTAGTGAAAATGAGATAGGGCAAGGTGGATTCGGCTCTGTCTACAAGGGCCAACTCAATGGACAGGAGATAGCAGTCAAAAGATTGTCCAAAGATTCAGGACAGGGGACTCAAGAGTTTAAGAATGAAGTCAAACTAATTGCCAAACTCCAACACAGAAATCTTGTGAGGTTGCTTGGTTGTTGCATTCACAAAGAAGAAAGGATGTTGATCTATGAGTACCTACCAAACAAAAGTTTGGATTTCCTTATATTTGATATAACACAAAGGGCTTTATTGTGCTGGGATAAACGTTTCGAAATCATTTTTGGCATTGCTCGGGGTGTTCTTTATCTTCATCAAGATTCAAGACTGAAAATAATTCATAGAGACCTGAAAGCTAGCAATGTTCTCTTGGATGCTGCAATGAACCCCAAAATCTCAGATTTTGGTATGGCTAGAATATTTGGAGAAGATCAAATCCAAGCAAAAACGAGAAGAGTGGTTGGAACATATGGTTATATGTCACCAGAATATGCAATGGAAGGACAATATTCAACAAAATCAGATGTCTTTAGTTTTGGAGTCCTACTGCTAGAGATTATTAGTGGCAAGAGGAACACAGATCGTGACAAAGAAAGGAAATCTATAAATTTGATTGGACATGTATGGGACTTGTGGAGAGAAGGAAGGGCCTTGGACATAGTGGACTCTACAATAGGACAATCTTTTCCTGCAGCAGTGGCTCTGAGGTGTATACAAATTGGGCTTTTATGTGTGCAAGAAAGTGCCCTCAGTCGACCCTCTATGTTAGAAGTTGTTTTCATGCTAGGAAATGAAACAAATCTTCCCTCACCCCAAAAGCCTGCATTTATATTAAATGGCGACAAAGAATTTCAAGAGTCATCAACATCTGGGGGAGAATCTTCAGTAAATGAGGTCACAACTACTACCGTCAGTGCTCGGTAA 2571 0.4119 MVQGRVRVSTLILLITGIYSTFLWAKIMSIAKWVVILMILPHVSIWVCSASDTITIDKPISDGEFLISKAEKFTLGFFSPGKSSYRYLGIWYKNIPELTAVWVANRDNPINDTSGVLSLNPDGNLRLHHNQSNFPIWFTNVSVSPPSITVIAQLSDVGNLLLTQNNSKTTIWQSFDHPTDTMLPYVKLGINRRTGQSWILRSWKTEDDPGTGSFMFKFNTSGKSQLFMYKQNLPWWRGGSFNGEIFVGMPYMKRAVTTFNVSFVDDDDQVALAYNMFDKSIIARVVVHQLGFLQVLTWDSQKNLWNRFWSSPQVTCDNYGTCGSNSNCDPLNYEDSLCSCLPGFEPRSPHDWYQNKDTSGGCVRKNNGRSICRNGEGYVRVESVKIPDTSIAIAKMGLNLQQCEQECLRNCSCMAYAAADVRNGGSGCLAWYGALMDTQKYTEQGQDLYVRVDAIELANYTNRSKRQLAKKGIVEISIASVAAIALFIALCIYCFWRKRQDRIKMMHYLNQDSSTEEENNRTRPNLPFFDLKTIMAATNNFASENEIGQGGFGSVYKGQLNGQEIAVKRLSKDSGQGTQEFKNEVKLIAKLQHRNLVRLLGCCIHKEERMLIYEYLPNKSLDFLIFDITQRALLCWDKRFEIIFGIARGVLYLHQDSRLKIIHRDLKASNVLLDAAMNPKISDFGMARIFGEDQIQAKTRRVVGTYGYMSPEYAMEGQYSTKSDVFSFGVLLLEIISGKRNTDRDKERKSINLIGHVWDLWREGRALDIVDSTIGQSFPAAVALRCIQIGLLCVQESALSRPSMLEVVFMLGNETNLPSPQKPAFILNGDKEFQESSTSGGESSVNEVTTTTVSAR 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2520 856 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 47 175 - -
Glsi11g2520 856 Gene3D Phosphorylase Kinase; domain 1 502 615 - -
Glsi11g2520 856 SMART blect_4 57 178 IPR001480 -
Glsi11g2520 856 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 43 803 - -
Glsi11g2520 856 CDD STKc_IRAK 547 811 - -
Glsi11g2520 856 ProSiteProfiles PAN/Apple domain profile. 372 453 IPR003609 -
Glsi11g2520 856 Pfam Protein tyrosine and serine/threonine kinase 544 807 IPR001245 GO:0004672|GO:0006468
Glsi11g2520 856 SUPERFAMILY alpha-D-mannose-specific plant lectins 100 209 IPR036426 -
Glsi11g2520 856 ProSiteProfiles Bulb-type lectin domain profile. 51 175 IPR001480 -
Glsi11g2520 856 PIRSF SRK 24 856 IPR024171 GO:0004674
Glsi11g2520 856 Gene3D Hepatocyte Growth Factor 370 451 - -
Glsi11g2520 856 CDD PAN_AP_plant 373 452 - -
Glsi11g2520 856 Pfam S-locus glycoprotein domain 236 347 IPR000858 GO:0048544
Glsi11g2520 856 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 616 819 - -
Glsi11g2520 856 ProSitePatterns Protein kinases ATP-binding region signature. 547 568 IPR017441 GO:0005524
Glsi11g2520 856 SMART ntp_6 373 452 IPR003609 -
Glsi11g2520 856 Pfam PAN-like domain 372 438 IPR003609 -
Glsi11g2520 856 Pfam D-mannose binding lectin 99 204 IPR001480 -
Glsi11g2520 856 ProSitePatterns Serine/Threonine protein kinases active-site signature. 661 673 IPR008271 GO:0004672|GO:0006468
Glsi11g2520 856 MobiDBLite consensus disorder prediction 831 856 - -
Glsi11g2520 856 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 505 615 - -
Glsi11g2520 856 ProSiteProfiles Protein kinase domain profile. 541 825 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g2520 856 Gene3D - 45 176 IPR036426 -
Glsi11g2520 856 MobiDBLite consensus disorder prediction 829 856 - -
Glsi11g2520 856 SMART serkin_6 541 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g2520 856 CDD B_lectin 57 178 IPR001480 -
Glsi11g2520 856 SUPERFAMILY Protein kinase-like (PK-like) 524 829 IPR011009 -
Glsi11g2520 856 Gene3D Transferase(Phosphotransferase) domain 1 616 821 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2520 Glsi-ChrGlsi11 17856393 17860511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2520 459 826 Receptor kinase-like Gene Family AT4G23190 51.475 6.70e-126 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi11g2520 PK_Tyr_Ser-Thr 2.7e-47 CL0016