Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2519 ATGGGAGGTTTTCCTAACCTCCTCCATATCTACCTCTTCTGGTTCTTCTTCACTTTCCTCGCTCTTTTCTCCTCAATTTCAATCTCTGTCGATACCCTAACTGCAACCCAATTTCTCGCAACCAACCAAACCCTTTTATCACCAAAGCAAATTTTCGAACTGGGTTTCTTTAATCCAAGCAATTCCAGATGGTTTCTGGGTATATGGTACAAGAGCATTAGCCCTAGAACAGTGGTTTGGGTGGCGAACAGAGACGCCCCACTTGAGAATCCCGCTGGGATTCTCAAGATCGGAGACAAAGGAAACGTGGTTCTTCTCGATCAATCAGGGATGCCCAGATGGTCCTCGAATCAAACCGCTGCTTCGAACCCAGTTCTTCAGCTTCTGGATTCTGGGAATTTGGTTCTCAGAGAAGCAAACCAGAACGACCCCAAGAAGTATCTATGGCAGAGCTTCGATTACCCCACGGATAATCTCTTACCGGGCATGAAGCTGGGGTGGAACTTCGACACCGGTATGGAGAGGCACATAACGTCGTGGAGGGACACCGGAGATGACCCCTCCACCGGAGATATTTCCTTCAAGTTAGATTTCCGAGGAGTCCCAGAAATTTTCTTGTTAAACAAACTGAACAGAGTATACCGAAGTGGGCCTTGGAATGGTGAGAGATTCAGCGGAGTACCCGAAATGCAACCTAGTACAGATTCCATCAAGTTCTCTTTTTTCTCAGACGAACACGAATCATACTACACATTCTCAATTGGGAACCAATTGTTGTTCTCCCGACTCACTGTAACCTCGAGCGGTGAGCTTCAACGCCTCACGTGGATCGAAAGCAGCCAACTTTGGACCAAATTCTGGTACGCTCCGAAAGACCAATGCGATTACTACAAAGTATGTGGTCCATATAGCATCTGCGATGCAAATGCTTCTCCAGTTTGCAAGTGTATGAGAGGATTCAGGCCAAAGAATCAGCAGGCGTGGAATTTGAGAGATGGGTCTGATGGGTGTATGAGGAACACAGAACTAGATTGTGGGAAAGACAAGTTCTTGGAGCTGCAGAATGTGAAGTTGCCGGAGACAACCTCAGTTTTTGCGAACAGGAGCATGAGCCTTATGGAGTGTAAGGATTTGTGCCACAAGAACTGTTCCTGCACTGCTTTTGCTAACATAGAGATCACCAATGGAGGAACCGGTTGTGTGATGTGGGGTGATGAGCTCATAGATGTAAGGCAGTACCCTAACGGTGGGCAAAATCTCTATATCAGATTAGCAGCTTCTGATGTAGATGACATGGGATCTGCTAGTAGTTCTCACAAGAAAAAAAATATAGGTGAGTTTGTGGGAATTACAGTTGCTGCAGCTATTATACTTTTGGGATTGGTTATCTGTTTCTCATGGAAGAAGAGGAAAATGCAAAACATACGGAAAGGGAAGATAGAATATAGAGGTTCATTAGAGAGAAGTCAAGATTTTCTAATGACTGAAATTGCAGTTTCAAGTAACAGAGATCACTCATCTGAAAGGAAAATGGATGACCTTGAGTTGCCATTGTTTGATTTTAATACCTTAACAATGGCTACAAACAACTTCTCTGAAGCAAATAAACTTGGACAAGGTGGCTTTGGTAGTGTTTACAGGGGTAGGTTGTTGGAAGGCCAAGAAATTGCTGTGAAGAGGCTGTCAAGAAACTCTGGGCAAGGAATTGAAGAATTCAAGAATGAGGTCAAGTTAATTGTCAAGCTTCAACACCGGAATCTTGTTAGGCTGTTTGGTTGCTGCGTTGAGATGGATGAGAAGATGCTCATTTATGAATACTTGGAAAACAGAAGCCTTGATTCCATTTTGTTTGACAAAGAAAAAAGATGCTTACTAAATTGGCAAAGGCGCTTCAGTATCATATGTGGAATTGCTAGAGGACTTCTTTATCTTCATCAAGATTCCAGGTTGAAGATTATTCACAGGGATCTCAAGGCAAGCAACATTTTGCTTGACAGAGAAATGAATCCTAAGATATCAGACTTTGGGATGGCTAGAATTGTTGGCACAGATCAAACAGAAGCAAATACATTGAGAGTTGTTGGAACATATGGCTACATGTCCCCTGAATATGCCATGGACGGGCTCTTCTCAGTAAAATCTGATGTTTTTAGTTTTGGAGTTTTAGTGCTGGAAATCATAAGTGGCAAGAAGAACAAGGGGTTCTATTACTCAAACAATGAATTGAATCTTTTAGGACATGCATGGATGCTGTGGAAAGAAGGAAATGCTTTGGAACTAGTAGATTCATCGATTGGTGATTCATATGTGCCATCTGAAGTTCTTAGATGCATCCAGGTTGGGCTCTTATGTGTGCAGGAGCGTGCAGAAGATAGGCCAACAATGTCTGCAGTAGTGTTGATGCTGTGTAGTGAAACTGCAACTATGCCTCAGCCAAAAAACCCAGGGTTTTGCCTTGGAAGAAACCCTATTGAAACAGATTCTTCTTCAAGCAAACAAGAAGAATCATGCACTGTGAACCAAGTCACAGTCACGATGCTAAATGCCAGGTAG 2553 0.432 MGGFPNLLHIYLFWFFFTFLALFSSISISVDTLTATQFLATNQTLLSPKQIFELGFFNPSNSRWFLGIWYKSISPRTVVWVANRDAPLENPAGILKIGDKGNVVLLDQSGMPRWSSNQTAASNPVLQLLDSGNLVLREANQNDPKKYLWQSFDYPTDNLLPGMKLGWNFDTGMERHITSWRDTGDDPSTGDISFKLDFRGVPEIFLLNKLNRVYRSGPWNGERFSGVPEMQPSTDSIKFSFFSDEHESYYTFSIGNQLLFSRLTVTSSGELQRLTWIESSQLWTKFWYAPKDQCDYYKVCGPYSICDANASPVCKCMRGFRPKNQQAWNLRDGSDGCMRNTELDCGKDKFLELQNVKLPETTSVFANRSMSLMECKDLCHKNCSCTAFANIEITNGGTGCVMWGDELIDVRQYPNGGQNLYIRLAASDVDDMGSASSSHKKKNIGEFVGITVAAAIILLGLVICFSWKKRKMQNIRKGKIEYRGSLERSQDFLMTEIAVSSNRDHSSERKMDDLELPLFDFNTLTMATNNFSEANKLGQGGFGSVYRGRLLEGQEIAVKRLSRNSGQGIEEFKNEVKLIVKLQHRNLVRLFGCCVEMDEKMLIYEYLENRSLDSILFDKEKRCLLNWQRRFSIICGIARGLLYLHQDSRLKIIHRDLKASNILLDREMNPKISDFGMARIVGTDQTEANTLRVVGTYGYMSPEYAMDGLFSVKSDVFSFGVLVLEIISGKKNKGFYYSNNELNLLGHAWMLWKEGNALELVDSSIGDSYVPSEVLRCIQVGLLCVQERAEDRPTMSAVVLMLCSETATMPQPKNPGFCLGRNPIETDSSSSKQEESCTVNQVTVTMLNAR 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2519 850 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 607 810 - -
Glsi11g2519 850 Pfam Receptor serine/threonine kinase 487 521 IPR022126 GO:0004674
Glsi11g2519 850 ProSitePatterns Serine/Threonine protein kinases active-site signature. 652 664 IPR008271 GO:0004672|GO:0006468
Glsi11g2519 850 ProSitePatterns Protein kinases ATP-binding region signature. 537 559 IPR017441 GO:0005524
Glsi11g2519 850 SMART blect_4 36 155 IPR001480 -
Glsi11g2519 850 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 152 - -
Glsi11g2519 850 Gene3D Transferase(Phosphotransferase) domain 1 607 813 - -
Glsi11g2519 850 Gene3D Hepatocyte Growth Factor 343 423 - -
Glsi11g2519 850 PIRSF SRK 4 850 IPR024171 GO:0004674
Glsi11g2519 850 CDD PAN_AP_plant 341 425 - -
Glsi11g2519 850 CDD STKc_IRAK 537 803 - -
Glsi11g2519 850 Gene3D - 24 152 IPR036426 -
Glsi11g2519 850 ProSiteProfiles PAN/Apple domain profile. 345 425 IPR003609 -
Glsi11g2519 850 Pfam S-locus glycoprotein domain 214 324 IPR000858 GO:0048544
Glsi11g2519 850 SMART ntp_6 345 424 IPR003609 -
Glsi11g2519 850 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 793 - -
Glsi11g2519 850 CDD B_lectin 36 155 IPR001480 -
Glsi11g2519 850 SMART serkin_6 531 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g2519 850 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 495 606 - -
Glsi11g2519 850 Pfam Domain of unknown function (DUF3403) 804 850 IPR021820 GO:0004674
Glsi11g2519 850 ProSiteProfiles Protein kinase domain profile. 531 817 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g2519 850 Gene3D Phosphorylase Kinase; domain 1 504 606 - -
Glsi11g2519 850 Pfam Protein tyrosine and serine/threonine kinase 534 800 IPR001245 GO:0004672|GO:0006468
Glsi11g2519 850 Pfam D-mannose binding lectin 77 181 IPR001480 -
Glsi11g2519 850 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 183 IPR036426 -
Glsi11g2519 850 SUPERFAMILY Protein kinase-like (PK-like) 511 802 IPR011009 -
Glsi11g2519 850 Pfam PAN-like domain 345 410 IPR003609 -
Glsi11g2519 850 ProSiteProfiles Bulb-type lectin domain profile. 30 149 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2519 Glsi-ChrGlsi11 17847709 17854764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2519 519 850 Receptor kinase-like Gene Family AT4G11530 59.050 4.91e-135 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi11g2519 PK_Tyr_Ser-Thr 4.6e-48 CL0016