Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2516 ATGGAATTCAGAACTACACCTAACTCGACCATTATTTTGCTTATATTTTCCAGCTTTTGCTTGGGTTTAAGCTCTGCCAAAGATACCATTACATCAACCCAATTCATCAGAGACTCTGAGACAGTGAGCTCGAACAGCAGTGACTTCAAACTAGGATTCTTCAGCCCTGAGAATTCAACAAATCGCTATGTGGGAATTTGGTATCTCTCTGAAGTCAACATCATATGGATAGCTAACAGAGACCAGCCGCTTAAGGATTCTTCTGGGATTCTCAGAATTTCTGAAAACGGCAACCTTGTGGTGTTGAATGGACAAAACCTCGTCATCTGGTCATCAAATGTGTCAACCAATGCTACCAACACAACAGCCCAGCTTCAAGATTCTGGGGATCTAATCCTTCTAGATGATACCAATGGAGAGACAATTTGGGAGAGTTTCCAACATCCTTGTGATGCAGCTGTGCCTAAGATGAAAATCAGTGCCAACAGAATCACGGGTAAGAAGATACAATTCATATCATGGAAAAGCCCTTCTGATCCATCTACTGGGTACTTCACAGGTAGCATTGAACGCCTGGATGTTCCAGAAGTGTTCTTCTGGGTCAATGGAACTATCCCATATTGGCGAACTGGTCCATGGAATGGAAGGATCTTCATCGGATCACCCCAAATGTCAACTGGGTATATGTACGGATGGAGCCTAGGAAACGAAGAAGATGGAACTGTTTATCTAACTTATAATTTTCTAGATCAATCTGCGTCTGGAATCCTTGCCTTGAACCCACAAGGCAAACTTAAACTGGTAAGGTTTTACAACAGAAAGGAATATATGAATGTGGTATTACCACAAACAGATTGCGATCACTACGGCAAATGCGGGGCGTTTGGAAGCTGTGACCAGCAGAGTTCACCAATTTGTAGCTGCTTGACTGGGTTTGAACCCAGAGATTTAGAGGAATGGAATAGGCAAAATTGGACAAGTGGGTGTGCTAGAAAGGCATCGCTGAAGTGTGAGGGCTTGAGAAATGGAAGTGAAGTTGGGGAAGGAGATGGGTTTCTTAAATTGCAGAATATGAAAGTGCCAGACTTCGCAGAGAGATCAACCGCTGAGGAAGGTCAATGCGGAAGTGAGTGCTTGAAGAATTGCTCTTGCTTGGCATATGCCTATGATTCTGGCATTGGCTGCATGTATTGGACAAGAGCCTTAATTGACATACAAAAGTTCTCTAATGGAGGAGTTGATCTTTACATTCGTCTGGCCCATTCAGAGCTGGGAAAACAGTATAAGAAAAAAAGGGACAAGGGAGCAGTCATCGCAATTACAGTGTCAATAGGAACGGTTACCTTAGTCGCCTCTGCATATTTAGTCGTCTGTGTCTGTCTCTCACGGCGGAAACGGACCCTAAAACAAAAGGAAAAGCAGAATCAAAGTGTGGGCGACGTCCAGAAACAAGTTAAACTGGATGAGCTACCGCTATTTGATTTTGAAAAGCTAGCAACTGCTACAAACAACTTTCACTTGGCTAATATGCTAGGGAAGGGAGGTTTTGGTCCAGTATATAAGGGAATACTGCAAGATGGTCAGGAAATTGCAGTGAAAAGACTCTCCAGAGCATCTGGGCAAGGGTTAGAAGAGTTCATGAATGAGGTGGTAGTGATTTCTAAGCTTCAACATCGTAATCTTGTGAAACTTCTTGGCTGCTGCGTTGAAGGAGAGGAAAAGATGTTGATCTATGAGTTCATGCCAAATAAAAGTTTGGATGCTTTTCTTTTCGATCCCCTCCAACGAAAATTACTAGGTTGGAGAAAACGATTTAACATAATTGAAGGAATAGCTCGAGGCTTGCTTTATCTTCATAGAGATTCTAGACTAAAAATTATACATAGAGATCTGAAGGCAAGTAACATCTTGCTGGATGGAGAGATGAATCCAAAGATATCAGATTTTGGTTTGGCTAGAATTTTTGGAGGTAGCGAAGATGAGGTTAATACGAAAAGAGTTGTTGGAACATATGGTTACATGTCTCCTGAATATGCAATGGAAGGATTGTTTTCAGAGAAATCAGATGTCTATGGCTTTGGAATATTGTTGCTAGAGATTATTAGCGCAAGAAGAAACACTAGCTTTTATAGGGATGAACGTTCTCTTAGCCTTGTAGGATTTGCATGGAAGCTATGGAATGAAGAGAAGATTGTATCATTGATAGACGCAGAGATATGGGATGGAAGCAATGAGAATGATATAGTGAAGTGCATACACATTGGACTTCTATGTGTACAAGAAGTTGCAAAAGAAAGGCCAACCATGACCAATGTAGTTACGATGCTTATCAGTGAGAATGTGCATCTTCCTCGTCCAAGGCAAGTAGCATTTGTGCAGAAGCACTGTTTGTCTAGTTCAGAGTGCTCTCACTCTCAGGAAGCTCAATGTAACTCCAACAACCATTTAACTCTTACTGATATTCAAGGCAGATAG 2475 0.4178 MEFRTTPNSTIILLIFSSFCLGLSSAKDTITSTQFIRDSETVSSNSSDFKLGFFSPENSTNRYVGIWYLSEVNIIWIANRDQPLKDSSGILRISENGNLVVLNGQNLVIWSSNVSTNATNTTAQLQDSGDLILLDDTNGETIWESFQHPCDAAVPKMKISANRITGKKIQFISWKSPSDPSTGYFTGSIERLDVPEVFFWVNGTIPYWRTGPWNGRIFIGSPQMSTGYMYGWSLGNEEDGTVYLTYNFLDQSASGILALNPQGKLKLVRFYNRKEYMNVVLPQTDCDHYGKCGAFGSCDQQSSPICSCLTGFEPRDLEEWNRQNWTSGCARKASLKCEGLRNGSEVGEGDGFLKLQNMKVPDFAERSTAEEGQCGSECLKNCSCLAYAYDSGIGCMYWTRALIDIQKFSNGGVDLYIRLAHSELGKQYKKKRDKGAVIAITVSIGTVTLVASAYLVVCVCLSRRKRTLKQKEKQNQSVGDVQKQVKLDELPLFDFEKLATATNNFHLANMLGKGGFGPVYKGILQDGQEIAVKRLSRASGQGLEEFMNEVVVISKLQHRNLVKLLGCCVEGEEKMLIYEFMPNKSLDAFLFDPLQRKLLGWRKRFNIIEGIARGLLYLHRDSRLKIIHRDLKASNILLDGEMNPKISDFGLARIFGGSEDEVNTKRVVGTYGYMSPEYAMEGLFSEKSDVYGFGILLLEIISARRNTSFYRDERSLSLVGFAWKLWNEEKIVSLIDAEIWDGSNENDIVKCIHIGLLCVQEVAKERPTMTNVVTMLISENVHLPRPRQVAFVQKHCLSSSECSHSQEAQCNSNNHLTLTDIQGR 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2516 824 SMART ntp_6 347 419 IPR003609 -
Glsi11g2516 824 FunFam Liguleless narrow1 581 784 - -
Glsi11g2516 824 Gene3D Transferase(Phosphotransferase) domain 1 581 787 - -
Glsi11g2516 824 ProSiteProfiles Protein kinase domain profile. 505 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g2516 824 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 767 - -
Glsi11g2516 824 CDD STKc_IRAK 511 776 - -
Glsi11g2516 824 Pfam S-locus glycoprotein domain 208 315 IPR000858 GO:0048544
Glsi11g2516 824 ProSiteProfiles PAN/Apple domain profile. 337 420 IPR003609 -
Glsi11g2516 824 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Glsi11g2516 824 Gene3D - 23 147 IPR036426 -
Glsi11g2516 824 Pfam Protein tyrosine and serine/threonine kinase 506 776 IPR001245 GO:0004672|GO:0006468
Glsi11g2516 824 CDD B_lectin 33 149 IPR001480 -
Glsi11g2516 824 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
Glsi11g2516 824 CDD PAN_AP_plant 347 420 - -
Glsi11g2516 824 SMART serkin_6 505 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g2516 824 SUPERFAMILY Protein kinase-like (PK-like) 490 806 IPR011009 -
Glsi11g2516 824 PIRSF SRK 3 824 IPR024171 GO:0004674
Glsi11g2516 824 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 146 - -
Glsi11g2516 824 Pfam D-mannose binding lectin 74 175 IPR001480 -
Glsi11g2516 824 Pfam PAN-like domain 348 405 IPR003609 -
Glsi11g2516 824 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 180 IPR036426 -
Glsi11g2516 824 Gene3D Phosphorylase Kinase; domain 1 462 580 - -
Glsi11g2516 824 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 467 580 - -
Glsi11g2516 824 SMART blect_4 33 149 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2516 Glsi-ChrGlsi11 17813334 17816881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2516 437 794 Receptor kinase-like Gene Family AT4G05200 52.514 1.37e-124 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi11g2516 PK_Tyr_Ser-Thr 4.6e-48 CL0016