Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2513 ATGAAGAACTGCGAGCTCTGCAATTCTCCAGCAAAGCTATTCTGTGAATCAGATCAAGCTAGTCTCTGCTGGAAATGCGATGCAAAGGTTCATAGTGCTAACTTCCTCGTCACCAAGCATTCCAGAATCCTTCTCTGCCATATTTGTCAATCCTTAACGCCTTGGCATGGCTCTGGACCCAAGTTCGTACCCACCATCTCCATTTGCGACCTCTGTATTAGCGACAGTAACGAGTTCTGCGATGATGATGATGATGACGACGAGGACGACGATGATACAGACAACGATGATGTCGGCGAAGAAGATTACGAAGAAGAAGAAAATCAGGTAGTTCCATGGACTTCTACGCCACCACCTCCACCGCCGCTAGTTTCTAGTTCTTCGGAGAGTTCGGGATCTTCTAAGGTTGATAGTGAAGAGGGTGTCTGA 429 0.4732 MKNCELCNSPAKLFCESDQASLCWKCDAKVHSANFLVTKHSRILLCHICQSLTPWHGSGPKFVPTISICDLCISDSNEFCDDDDDDDEDDDDTDNDDVGEEDYEEEENQVVPWTSTPPPPPPLVSSSSESSGSSKVDSEEGV 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2513 142 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Glsi11g2513 142 Pfam B-box zinc finger 2 43 IPR000315 GO:0008270
Glsi11g2513 142 MobiDBLite consensus disorder prediction 80 108 - -
Glsi11g2513 142 CDD Bbox1_BBX-like 4 45 - -
Glsi11g2513 142 SMART bboxneu5 1 45 IPR000315 GO:0008270
Glsi11g2513 142 MobiDBLite consensus disorder prediction 126 142 - -
Glsi11g2513 142 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 134 - -
Glsi11g2513 142 MobiDBLite consensus disorder prediction 80 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2513 Glsi-ChrGlsi11 17794987 17795415 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2513 2 123 C2C2-CO-like Transcription Factor Family AT4G27310 35.976 2.12e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi11g2513 zf-B_box 1.8e-08 No_clan