Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2509 ATGGACCCTGGGACCCTTATATATGCCCCCAACCTCCATAATTCTCCGTCGACCAGCAGGGGAAAGTACACAGAATCTAAATCAAGTAACTTCACTGCCACTGCTCGCCGGGAAATGACGTCACACCTCTCGGCTGACTTCGACGCCGACTCTGTCGCATCGTCCCCTCGCTCCGACCATTTCCATGAACCGCTACCACGTGTCCGCTTCATGTGTAGCTTCGGTGGCAAGATTTTGCCCCGTCCCCACGACAACCAGCTCCGATACGTCGGCGGCGACACCCGAATCGTCGCCGCCCACCGCTCCATCTCCTTCTCCGGTCTCCTTCTCAAGCTTTCTAAGCTCACAGGCACTATCAATATAACAGTGAAGTATCAGCTTCCCAATGAGGATCTGGACGCGTTGATATCTGTTTCAACGGACGAGGACGTGGAGAACATGATGGACGAGTATGAGCGGTTAGCACAGAATCAAATCTCGCGCTCGGCTCGGTTTCGGTTGTTCTTGTTTATTCAGGAAGAAGATTCTAGAGCCAGCAGTATCAGCTCGCTCCTCGACGGCTCCGCCAAACGGGAGAATTGGTTCGTCGACGCTCTCAATGGTGGCGGAGTCGGGCTCGAGCGAGGCCGGTCTGAAGCGTCCTCGATGGTGTCTGAAGTGCCCGATTATCTCTTCGGTTTGGAAAACTGCGACGAGGCTCAAAACCGTGAACCGAGAGCCAAGGCCCGACCCGTTCTCCATGACAATGTCTCCTGTTCGGATCCCGGTTCGCCTGCTCCGGTTGTCTCCTCCCCGTTTTGTTCCACGTCATCAGCTCCGAATGTGCCGTCCATCCCCAACCTTCCTCCGGTCAAAACCAAACCCGATAACCAAGTTCCCGAAATGGAGCCAAAAGAAAATCAAATTGACGATTATCAAGTTGTAATGGGAAACCCAAGTAGCCAGATACTGCGCTACCCGCCGGATGTTACTTATTCGGGTCATACTATTCAACCCGTTCCTGTTTACTACATTCCACCGGGTGCAGTCCCGGTGCAACCCGGGAAAGTACCAGTCCAACCAGTTCCCATACAGGCACCCTATGTTCAACAGTACCCGGGAGTACTGCCACCTCAGGTGCCAGTCGGGTATCATCATTTGGTTCCCGGTTCGGGCCAAGTATACGGTGGGGGAATGAGGCCTGTGGGTGCAGTGCATCCGTACGATCCATCGGCGAGGGTAGTTCCGGATGGTGTGAGACAGCAGCAAGTGTATCGTGCAGTTCCAAATTCTGGTGGCCCAGCTGTTTATCCGGGTATGGTGATGGCAGGTGGCAGGGATGAATCACAGAGAGGTGGAGCGGAGCTTGTAGCGGGTCGGGGCACCAACACTCTGAATTGA 1380 0.5457 MDPGTLIYAPNLHNSPSTSRGKYTESKSSNFTATARREMTSHLSADFDADSVASSPRSDHFHEPLPRVRFMCSFGGKILPRPHDNQLRYVGGDTRIVAAHRSISFSGLLLKLSKLTGTINITVKYQLPNEDLDALISVSTDEDVENMMDEYERLAQNQISRSARFRLFLFIQEEDSRASSISSLLDGSAKRENWFVDALNGGGVGLERGRSEASSMVSEVPDYLFGLENCDEAQNREPRAKARPVLHDNVSCSDPGSPAPVVSSPFCSTSSAPNVPSIPNLPPVKTKPDNQVPEMEPKENQIDDYQVVMGNPSSQILRYPPDVTYSGHTIQPVPVYYIPPGAVPVQPGKVPVQPVPIQAPYVQQYPGVLPPQVPVGYHHLVPGSGQVYGGGMRPVGAVHPYDPSARVVPDGVRQQQVYRAVPNSGGPAVYPGMVMAGGRDESQRGGAELVAGRGTNTLN 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2509 459 SMART PB1_new 82 172 IPR000270 GO:0005515
Glsi11g2509 459 Gene3D - 88 173 - -
Glsi11g2509 459 PANTHER OS05G0427100 PROTEIN-RELATED 49 385 - -
Glsi11g2509 459 Pfam PB1 domain 83 170 IPR000270 GO:0005515
Glsi11g2509 459 SUPERFAMILY CAD & PB1 domains 83 179 - -
Glsi11g2509 459 CDD PB1_UP2 71 170 - -
Glsi11g2509 459 MobiDBLite consensus disorder prediction 1 29 - -
Glsi11g2509 459 ProSiteProfiles PB1 domain profile. 67 164 IPR000270 GO:0005515
Glsi11g2509 459 MobiDBLite consensus disorder prediction 10 29 - -
Glsi11g2509 459 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 87 172 - -
Glsi11g2509 459 MobiDBLite consensus disorder prediction 440 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2509 Glsi-ChrGlsi11 17773703 17775162 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2509 57 170 MAP Kinase Kinase Kinase AT3G46920 50.000 6.68e-31 124