Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2506 ATGGACAACGTGAAGCTTTGTGAGATTCATTATCTTCAAGGCCGCCATCGGCAGTACAAGGAGAAGGTCCCGGAATCGCTGAAGCTTCAGAGAAAGCGCAAGAAAGGGCTTAATAAGAACGACTCTGTTCTCAACAATGTAGAAATGAGGGCACGGAAAGTGGGCAAGATCGCGAAGATGATGAAGAGAAGGCGGAAAATGTCAGATGGTTCAGAATCAGTGGAAGCTCCTGTGAAGAAGAAGGCGTCCAAACAAGGTGATAGGCAGTTGGAGTTGATAAGGATGGTGCTGAAGAAAGAGGTTGAGAAGAGGAAGAAGAAGCTGGGAGAAAAGAGGAAGAAGGAGGAAGAGGAGGAGTTGCATTACAGTGAAGGAGAGTTAAAGAGAGAGTTGCCCAATGGTGTAATGGCAATCTCTGGGGCATCAACGCCACAAGATTACTGCAATGTGGGTTTCTATTGTGATGTTAAAGTTGTAACATATGGACGGAACTTGAAGAAGGGTAAGAGAAAGAAGTGTCATTGCTGGACCGGTGTTTCTTTAGTAGCAAATGCTGATACTTCAATTTATGCCTTGTTCTTTCAGGAATTTTTGGCTGGTAAAAGCAGAGTGAATAGAATATTGCATTTTCACTATTTGATCTCTATGCTCCTTCCTGTACTAAAACAAATAAATCAAGAACAGAATGCTGAGATAGGAACAGAAGCAAAAATAAGAGGTAAAAAACCCTCCGATATTCACATCAAGCAGGTTGAATTTTGTGGCAATGACCAAAATTACTGCAATCGCTGCAAAACACCCATTTTGGATCTCCATAGAAGCTGTCCTAGTTGTTCCCATAGCCTTTGCTTGAGTTGTTGTTGGCAATTATCTCAAGGAAACACCTCTGGAGACATTAACTCATCTATTTCCAAGTTATCTGATGGGACGAAAGCTTGCCTTGCCAGTAAAAACCATCTTTTGGAAAATAAGGTCATTTCCAGTGGCAATTCTATAGCACCATTGCCTGACTGGATAAATTATAATGTTACTGGCAGTGTATCTTGCCCGCCCACAGAGTTTGGGGGTTGTGGTGATAGCCTCCTTGAATTGAGATGTGTTTTTCCCTTAAGTTGGATCAAAGAAATGGAAGTAAAGGCAGAAGAAATAGTTTGCAGCTATGACTTCCCCGAAACTTCAGATAAAAGTTTGAGCTGCTCACTGTGTCTGGACACAGATGATAAAATTGATGGATTTAAGCTGTTACAAGAAGCAGCTCTAAGAGAAGATTCAAATGATAATTACTTGTTTTATCCCACTGTTTTAGACATCACTGGGGATAACTTTGAACACTTTCAGAAGCACTGGGTAAAGGGCCATCCTGTAGTTGTGCGAGATGTGCTCCAAAGTACATCAAACCTCAGTTGGGATCCACTGGCCATGTTCTGTGGTAATCTTGAGAGGTGCATTACAAGATATGAGAATGATAAGGATAAACTTGAAGCTTGTTTGGATTTGTTTGAGGTGGAAATTAACATTAGGCAGTATTTTACTGGGTCTCTTAGTAGTCATCCACAGAAAAACACGTGGCATGAGATGCTAAAACTAAAGGGGTGGCTGTCTTCCCAACTGTTCAAAGAACAGTTTCCAGCTCATTTTGCTGAAGTGATTGATGCTCTACCACTTCACGAATACATGAATCCCACATCTGGTATTCTGAATTTAGCAGTAAATTTGGTACAGGGGAGTGCAAAACATGTTCTGGGGCCATATGTCTATCTTTCATATGGCTGTGGTGACGAACAAAGTGAATTTGTGACAAAACTATGTTATGATCCATATGATGTGGTTAATATTATGGCACATACCACCGATGTCCCTCTCTCTACAGAACAGCTGACTAAAATAAGGAAGTTACTGAAAAGGCACAAAACTTTGTGTCAAAGGGAGTCTTCCAAAATTACGTCTGAGCAACTAAAGGAACAGAGAGTGGAAGTAAATTCATTACTGCCTGATGAAGACACTGAAAGAACAGATAATATGGTGAGAGAAAAAATGCACCTTTTCAGGAGAGCCAATAGAACAGCTTGCATCTCTACTGAAGCAAAAAAAGCAGCAAATCAGGGTATAAACAGCAAAATTTCCCAGAATGGAGAATGTGATTCTGATTCTGAACCATCTTTACTTCTCCACGAGACTTCTCAAAGCACAAAATTGTCTCCACATCATAATTGTAGAAATCCCTTTGAAAGCTTAGACAATGACAGAAATAAAAAGTTTGTTGAGCATTCTGGCGCGCAGTGGGATGTCTTTCGCAGACAAGATGTTCCAAAGCTCATAGAATACCTTAAAAGACACTCTGATGAATTTTCTCATACCCATGACTATCACAAGCAGATGGTCCATCCGATTCTAGATCAGAGCTTCTTTCTTGACAATACTCACAAAAGGAGGCTCAAGGAGGAATTTAAAATCGAACCATGGACTTTTGAGCAACATGTTGGTGAAGCTATCATCATTCCCGCTGGATGTCCATACCAGATTAGGAATCCTAAGTGTTGTGTTCATGTAGTACTGGAATTTGTGTCTCCTGAAAATGTTACTGAGTGTATCCGGTTGATTGATGAAGCCCGTCTGCTTCCAGAAGACCATGAAGCCAAAGTACACAAGCTTGAGGTGAAGAAAATGGTTCTTTATAGCATGCATTCGGCAATAAAAGAAATAAGTGAGCTCACCTGCAAAATGTGA 2727 0.4078 MDNVKLCEIHYLQGRHRQYKEKVPESLKLQRKRKKGLNKNDSVLNNVEMRARKVGKIAKMMKRRRKMSDGSESVEAPVKKKASKQGDRQLELIRMVLKKEVEKRKKKLGEKRKKEEEEELHYSEGELKRELPNGVMAISGASTPQDYCNVGFYCDVKVVTYGRNLKKGKRKKCHCWTGVSLVANADTSIYALFFQEFLAGKSRVNRILHFHYLISMLLPVLKQINQEQNAEIGTEAKIRGKKPSDIHIKQVEFCGNDQNYCNRCKTPILDLHRSCPSCSHSLCLSCCWQLSQGNTSGDINSSISKLSDGTKACLASKNHLLENKVISSGNSIAPLPDWINYNVTGSVSCPPTEFGGCGDSLLELRCVFPLSWIKEMEVKAEEIVCSYDFPETSDKSLSCSLCLDTDDKIDGFKLLQEAALREDSNDNYLFYPTVLDITGDNFEHFQKHWVKGHPVVVRDVLQSTSNLSWDPLAMFCGNLERCITRYENDKDKLEACLDLFEVEINIRQYFTGSLSSHPQKNTWHEMLKLKGWLSSQLFKEQFPAHFAEVIDALPLHEYMNPTSGILNLAVNLVQGSAKHVLGPYVYLSYGCGDEQSEFVTKLCYDPYDVVNIMAHTTDVPLSTEQLTKIRKLLKRHKTLCQRESSKITSEQLKEQRVEVNSLLPDEDTERTDNMVREKMHLFRRANRTACISTEAKKAANQGINSKISQNGECDSDSEPSLLLHETSQSTKLSPHHNCRNPFESLDNDRNKKFVEHSGAQWDVFRRQDVPKLIEYLKRHSDEFSHTHDYHKQMVHPILDQSFFLDNTHKRRLKEEFKIEPWTFEQHVGEAIIIPAGCPYQIRNPKCCVHVVLEFVSPENVTECIRLIDEARLLPEDHEAKVHKLEVKKMVLYSMHSAIKEISELTCKM 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2506 908 Coils Coil 483 503 - -
Glsi11g2506 908 SMART cupin_9 542 871 IPR003347 -
Glsi11g2506 908 Gene3D Cupin 422 873 - -
Glsi11g2506 908 MobiDBLite consensus disorder prediction 725 746 - -
Glsi11g2506 908 MobiDBLite consensus disorder prediction 64 86 - -
Glsi11g2506 908 ProSiteProfiles JmjC domain profile. 561 871 IPR003347 -
Glsi11g2506 908 MobiDBLite consensus disorder prediction 60 86 - -
Glsi11g2506 908 Coils Coil 98 119 - -
Glsi11g2506 908 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 31 906 IPR045109 GO:0032454|GO:0033169
Glsi11g2506 908 Pfam JmjC domain, hydroxylase 757 852 IPR003347 -
Glsi11g2506 908 SUPERFAMILY Clavaminate synthase-like 441 890 - -
Glsi11g2506 908 MobiDBLite consensus disorder prediction 104 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2506 Glsi-ChrGlsi11 17746759 17752554 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Glsi11g2506 JmjC 1.7e-10 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g2506 11 17746759 17752554 Glsi11g2506 11 17746759 17752554 CCT