Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2504 ATGGGTAGAGCACCGTGTTGTGATAAGAATGGCCTCAAGAAAGGACCATGGACACCAGAAGAAGACCAGAAACTCGTCGATTATATTCAGAAACATGGCTATGGCAATTGGAGGACACTCCCAAAGAATGCTGGGTTGCAAAGGTGTGGAAAGAGTTGCCGTCTCCGGTGGACCAACTATCTGCGGCCAGACATTAAACGAGGTCGCTTCTGTTTCGAAGAGGAGGAGACAATTATTCAGCTTCATAGCATTCTCGGAAACAAGTGGTCTGCAATTGCTTCTCGCTTGCCTGGAAGAACAGACAACGAGATAAAGAACTACTGGAACACCCACATTAGAAAAAGGCTGCTCCGAATGGGGATTGATCCTGTGACCCACAGTCCCCGGCTAGACCTCCTGGACCTTTCTTCCATTCTAAGCTCGTCTCTTTACGGCTCATCATCGCAGATGGATATTTCAAGGCTTCTTGGCATGCAGCAGCATCAGCATCTTTCCGTGAACCCAGAGCTTCTAAAGTTGGCTTCTTCCCTCATTTCTTCATCTCATCAAAAAAGAGAAAACCCCAACTTCTGCAACCCCCAAATTCAGCACCAAATCCCACAATTTGATCAAATCCAAGAACCACCTATTCAAGAAATGCCTTCACTTCCTTTAACAGAAACACAATTGGTCCAACCCAATGTGGATCCATACCCTTCAAGTTTCATCGACTTCAGTGATTGGCAAAGCGATAATGGAACTCTAACAGAGTACCACGTGCCTTCATTAATGCCGAGCTATGATCATATTAATCACCAACATATGATGGACCTTCCGTTGTCGGAGACGTCAAATTTTTATTCAAATAACGGCAACCAGAACTTCAACTTCGCCTCCGTTATATCAACGCAGTCGTCAAGTACTCCAACGCCGTTGAATTCGAGCTCGACGTACATCAACGGAAGCAGCACGGAGGATGATAGAGAAATTAGCTATGGTAGTACCAATATTTTGAAGTTTGAAATCCCAGACATTTTAGATGTTAATGACTTCATGTAA 1038 0.4461 MGRAPCCDKNGLKKGPWTPEEDQKLVDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFCFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILSSSLYGSSSQMDISRLLGMQQHQHLSVNPELLKLASSLISSSHQKRENPNFCNPQIQHQIPQFDQIQEPPIQEMPSLPLTETQLVQPNVDPYPSSFIDFSDWQSDNGTLTEYHVPSLMPSYDHINHQHMMDLPLSETSNFYSNNGNQNFNFASVISTQSSSTPTPLNSSSTYINGSSTEDDREISYGSTNILKFEIPDILDVNDFM 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2504 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Glsi11g2504 345 CDD SANT 16 61 IPR001005 -
Glsi11g2504 345 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi11g2504 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Glsi11g2504 345 FunFam Transcription factor MYB39 69 130 - -
Glsi11g2504 345 CDD SANT 73 112 IPR001005 -
Glsi11g2504 345 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Glsi11g2504 345 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Glsi11g2504 345 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi11g2504 345 Gene3D - 70 116 - -
Glsi11g2504 345 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi11g2504 345 MobiDBLite consensus disorder prediction 299 319 - -
Glsi11g2504 345 FunFam MYB-related transcription factor 13 66 - -
Glsi11g2504 345 Gene3D - 13 66 - -
Glsi11g2504 345 SMART sant 13 63 IPR001005 -
Glsi11g2504 345 SMART sant 66 114 IPR001005 -
Glsi11g2504 345 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2504 Glsi-ChrGlsi11 17726618 17727855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2504 1 345 MYB Transcription Factor Family AT4G21440 56.303 4.68e-119 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi11g2504 Myb_DNA-binding 2.3e-16 CL0123