Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2497 ATGGGTGATGAAGAGGGCATCATCAGAGAAGCGAAAATAGAGCAGGACTCGCCAGAATCATTCGCCGGAGATTCCAGTCTCCGGGGAGCTATCAAGTTTATATCTTCCTTGATTTCTTTTTCTCATTCAATCAGGGTCTTCGTTGCAAAATGGCAACTGATTCGTAACAAACTGGAAGAGCTCCATTCCGGGCTAATCGCCGTCGAGAACTGCGATTCCGGCGAGAACCCATTACTCTCTGGTTTGGTTCCTACGATATTGGTCACCGTGAACGAGTGTTACGATCTCGCTCGCCGCTGTGTTGATTTTTCTTACAGTGGGAAGCTTCTGATGCAGAGCGATTTGGATGTGATGTTCGCCAAGTTCGATCGTCATGTGAAGAAGCTATCAGAGGTATACGCAGGAGGTATTTTGACTCACAAGTACGCTCTCGTTGTTTCAAGGCCTAGTCTTGGAGCTTGCAAAGACGATATGAGGTTTTACATGAGGGACTTGCTAACAAGAATGAAGGTTGGTGATATGGGAATGAAAAGGCAGGCTTTGATTAATCTGCACGAGGTTGTGGTGGAAGATGAAAGGTATGTGAAAGTGATTGTGGAAATGGGAGACATAATCCATGTTTTGGTGAGTTTTCTTGATTCGCCAGAGATGGAAATCCAAGAAGAATCTGCCAAGGTGGTTTCTGTTATTGCAGGTTTCGATTCCTACAAAGGGGTTTTGATTACAGCTGGGATTATTTCTCCGCTGATTCGAGTTTTGGAATGTGGCAGCGAGACAGGGAAGGTAGGAGCTGCAAGGTGTTTGATGAAATTAACGGAGAATTCAGACAATGCTTGGTCGGTTTCAGCTCATGGGGGAGTCACATCCTTGCTAAAAATTTGCGATAATGTAGAATCCAAAGGAGAATTGGTTGGTCCTGCTTGTGGGGTATTGAGAAATCTGGTAAGTGTTGAGGAAATAAAGAGGTTCATGGCTGAAGAAGGTGCGGTTTCAACGTTTATCAGGCTTGTGAGATCCAAGGACGAAGCGATTCAGGTAAATTCCATTGAGTTTATTCAAAGCATTGCCTCAAGGGATGAATTGGTTAGGCAAATGGTGATTAGAGAAGGTGGGGTTCGCGCTTTGTTACGAGTTTTGGATCCTAAATGGTTGTGTTGTTCAAAAACCAGGGAGATAGCAATGAGAGCTATTGAAAATTTATGTTTTTCTTCATCTAGTTCTGTAAGTATGTTGATGAGTTGTGGATTTGTGGATCAACTGCTACATTATATTCGCAATGGGGAAGTTTCTATCCAAGAATTGGCTCTGAAAGTGGTATTCAGATTATGTGGAACATCAGAGGAAGCTAAGAAAGCAATGGGTGATGCAGGTTTCATGCCAGAGCTTGTTAAGTTTCTGAATGCAAAGTCATTTGAAGTTCGTGAAATGGCAGCCGAGGCACTCTCTGCCATGGTTGTGGTGCCTAAGAACAGAAAGAAATTTGTGCAGGATGACCAAAACATTGCCCTTCTTCTACAATTGCTCGACCCAGAAGAGGGAAATTCTGGTCATAAAAAGTTCTTAATTTCTATCTTAATGTCATTAACAAGCTGTAACAGTGGGAGAAAAAAGATTGTGAGTTCTGGGTATGCCAAAAACATAGAGAAACTCGCAGAAGCTGAAGTTTCTTCCGATGCCAAGAGACTTGTGAGGAAGCTATCGACAAACCGATTCCGCAGTATGTTGAGTGGAATCTGGCACTCATGA 1746 0.4324 MGDEEGIIREAKIEQDSPESFAGDSSLRGAIKFISSLISFSHSIRVFVAKWQLIRNKLEELHSGLIAVENCDSGENPLLSGLVPTILVTVNECYDLARRCVDFSYSGKLLMQSDLDVMFAKFDRHVKKLSEVYAGGILTHKYALVVSRPSLGACKDDMRFYMRDLLTRMKVGDMGMKRQALINLHEVVVEDERYVKVIVEMGDIIHVLVSFLDSPEMEIQEESAKVVSVIAGFDSYKGVLITAGIISPLIRVLECGSETGKVGAARCLMKLTENSDNAWSVSAHGGVTSLLKICDNVESKGELVGPACGVLRNLVSVEEIKRFMAEEGAVSTFIRLVRSKDEAIQVNSIEFIQSIASRDELVRQMVIREGGVRALLRVLDPKWLCCSKTREIAMRAIENLCFSSSSSVSMLMSCGFVDQLLHYIRNGEVSIQELALKVVFRLCGTSEEAKKAMGDAGFMPELVKFLNAKSFEVREMAAEALSAMVVVPKNRKKFVQDDQNIALLLQLLDPEEGNSGHKKFLISILMSLTSCNSGRKKIVSSGYAKNIEKLAEAEVSSDAKRLVRKLSTNRFRSMLSGIWHS 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2497 581 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 285 329 IPR000225 GO:0005515
Glsi11g2497 581 SUPERFAMILY ARM repeat 164 562 IPR016024 -
Glsi11g2497 581 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 18 580 - -
Glsi11g2497 581 Gene3D - 162 570 IPR011989 -
Glsi11g2497 581 SMART arm_5 191 232 IPR000225 GO:0005515
Glsi11g2497 581 SMART arm_5 233 273 IPR000225 GO:0005515
Glsi11g2497 581 SMART arm_5 274 316 IPR000225 GO:0005515
Glsi11g2497 581 SMART arm_5 446 486 IPR000225 GO:0005515
Glsi11g2497 581 SMART arm_5 358 402 IPR000225 GO:0005515
Glsi11g2497 581 SMART arm_5 404 444 IPR000225 GO:0005515
Glsi11g2497 581 SMART arm_5 317 357 IPR000225 GO:0005515
Glsi11g2497 581 Pfam Armadillo/beta-catenin-like repeat 447 482 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2497 Glsi-ChrGlsi11 17672268 17674013 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2497 319 575 U-box Gene Family AT2G23140 23.954 8.96e-07 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g2497 11 17672268 17674013 Glsi11g2497 11 17672268 17674013 CCT