Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2494 ATGCGGGGTTTCACTTTCTACGATCGACTTTCTAGAGCTTTCCATGACCGTTCCTCCCTTTCTAAGCTTGTAGTCCTCTTCACCGTAAGTGGGGGGACAGGGGCCCTTGTGGCTTATGCTGAAGCGAACCAAAGCAATGGAGCATACATTGGTTCATCAGAAACAGTTACCGACAAGAAAAAGGTGGTCGTGCTGGGAACTGGTTGGGCAGGAACAAGTTTCATGAGGAATCTAAACAACCCCAAATACGAGGTTCAGGTGGTGTCGCCTCGTAATTATTTTACATTCACTCCTTTGCTGCCTAGCGTTACGAGCGGCACAGTGGAAGCACGCAGTATTGTTGAACCAGTTCGCAATATTTTTAGGAAGAAAAATGTGGAGATTCAATTTAGTGAAGCAGAGTGTGTGAAGATTGATGCAGAAAACAGGAAAATTTACTGTAGATCTAATATAAACAATAATTTGAATGGGAAAGAAGAATTTGTGGTGGACTATGACTACCTAATCATAGCCGTGGGAGCTAATGTCAACACATTTAATACTCCTGGAGTGGAGGAGCATTGCCATTTCTTGAAGGAAGTAGAAGATGCTCAGAAGATTAGAAGAACTGTTATTGACTGCTTTGAGAGAGCAAGTTTGCCAAATGTAAGTGAAGAAGAGAAGAAAAGGATTCTTCATTTTGCCATTGTTGGAGGTGGCCCAACAGGAGTGGAGTTTGCAGCCTCGCTTCATGACTTTGTCAATGTGGATTTGGTCAAATTGTATCCAGGGATTAAAGATTTAGTTAAGATTACGCTTTTGGAGGCGGGAGGTCATATTTTGAGCATGTTTGACAAAAGAATTACTGCATTTGCTGAAGACAAGTTTGGAAGAGAGGGCATTGATGTGAAAACAGGATCCATGGTGGTGAAGGTGTCTGAGAAAGAAATTTCTACTAAAGAATTGAAAAATGGAGGAGAAATTACTACAATTCCATATGGAATGGCTGTGTGGTCAACTGGTATTGGCACTCGTCCATTTATCAAAGATTTCATGAAGCAAATTAACCAGGCTAACAGGCGTGCCTTGGCTACTGATGAATGGTTGAGGGTTGAAGGATGCGACAATGTCTATGCTCTTGGTGATTGTGCTACAATAAACCAGCGAAAAGTCATGGAAGATATTGCAGCAATTTTCAAGAAGGCAGATAAGGACAATTCAGGAACACTTACAGTGAAAGAATTTCAAGAGGCGATTGAGGACATCTGTGAAAGGTACCCTCAGGTGGAGCTATACTTGAAGAGCAAGCAGATGAGCAGCATTGTTGATCTGATGAAGGAAGCCAAGGGAGATGTTGAAAAAGAATCAATTGAGCTGAACATTGAAGAACTCAAAACAGCATTTTCTAAAGTGGATTCTCAGATGAAATTTCTTCCTGCTACAGCTCAGGTTGCATCCCAGCAAGGCACCTACCTGGCCAAGTGTTTTAACCGGATGGAAGAGTGTGAAAAGAATCCAGAGGGTCCTCTCAGGTTCAGGGGAGAAGGTCGCCATCGCTTCAAACCCTTCAGTTACAAGCACTTTGGTCAGTTCGCTCCTCTTGGAGGAGAACAGACAGCAGCACAGCTTCCCGGGGATTGGGTATCAATAGGTCACAGCTCCCAATGGTTATGGTATTCAGTCTATGCAAGCAAGCAAGTGAGCTGGCGTACAAGGGCGCTGGTCGTATCAGACTGGACAAGACGTTTTTTCTTTGGGAGGGATTCAAGTCGCATCTGA 1758 0.4352 MRGFTFYDRLSRAFHDRSSLSKLVVLFTVSGGTGALVAYAEANQSNGAYIGSSETVTDKKKVVVLGTGWAGTSFMRNLNNPKYEVQVVSPRNYFTFTPLLPSVTSGTVEARSIVEPVRNIFRKKNVEIQFSEAECVKIDAENRKIYCRSNINNNLNGKEEFVVDYDYLIIAVGANVNTFNTPGVEEHCHFLKEVEDAQKIRRTVIDCFERASLPNVSEEEKKRILHFAIVGGGPTGVEFAASLHDFVNVDLVKLYPGIKDLVKITLLEAGGHILSMFDKRITAFAEDKFGREGIDVKTGSMVVKVSEKEISTKELKNGGEITTIPYGMAVWSTGIGTRPFIKDFMKQINQANRRALATDEWLRVEGCDNVYALGDCATINQRKVMEDIAAIFKKADKDNSGTLTVKEFQEAIEDICERYPQVELYLKSKQMSSIVDLMKEAKGDVEKESIELNIEELKTAFSKVDSQMKFLPATAQVASQQGTYLAKCFNRMEECEKNPEGPLRFRGEGRHRFKPFSYKHFGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVSDWTRRFFFGRDSSRI 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2494 585 SMART efh_1 387 415 IPR002048 GO:0005509
Glsi11g2494 585 ProSitePatterns EF-hand calcium-binding domain. 396 408 IPR018247 -
Glsi11g2494 585 SUPERFAMILY FAD/NAD(P)-binding domain 59 278 IPR036188 -
Glsi11g2494 585 Gene3D - 52 430 - -
Glsi11g2494 585 Gene3D - 431 584 - -
Glsi11g2494 585 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 51 412 - -
Glsi11g2494 585 Pfam Pyridine nucleotide-disulphide oxidoreductase 60 386 IPR023753 GO:0016491
Glsi11g2494 585 ProSiteProfiles EF-hand calcium-binding domain profile. 383 418 IPR002048 GO:0005509
Glsi11g2494 585 SUPERFAMILY EF-hand 341 472 IPR011992 -
Glsi11g2494 585 SUPERFAMILY FAD/NAD(P)-binding domain 221 380 IPR036188 -
Glsi11g2494 585 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 429 584 - -
Glsi11g2494 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 226 244 - -
Glsi11g2494 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 26 45 - -
Glsi11g2494 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 165 183 - -
Glsi11g2494 585 PANTHER NADH DEHYDROGENASE 56 585 IPR045024 GO:0003954|GO:0006116
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2494 Glsi-ChrGlsi11 17648030 17652115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2494 1 585 Chloroplast and Mitochondria Gene Families AT4G21490 74.024 0.0 889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g2494 11 17648030 17652115 Glsi11g2494 11 17648030 17652115 CCT