Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2479 ATGGCAACTGCTCCGTCTTCTTCGTCCAAGGTTTGCTACAATTCAGAGTGCAAGGAATTGAAGTCAGACAGACCTAAGAAGGGCTGGAGGCTCCGTACCGGGGAGTTTTCCGAGCTTTGTGATCGATGCGGTTCTGTTTTCGAAGAAGGAAGATTCTGTGAGATTTTTCACTTGAATGCTTCTGGTTGGAGGACTTGTGAGACTTGTGGGAAGGGTATTCATTGTGGGTGCATTGTTTCAAGTACTGCCTTCACGTTGTTGGATCCTGGAGGCATAGAATGCATTACATGTGCCAGGAAGAATATTATTTTGTCATCCAATGTGCCTTGGCCACCATCTTTTTCTCTTCAAAATCGTTTATCTGAGAAAATATCTGAGAAACTTAGAGACCTGTCTGCAAAAAATTGGAGTCAATTAGCTGGATCAGGTCCTGTACCATGGAAGCAAGCACCCAGTCTGTTCAATTCGGTTTCTTCATCTGACATGCACCCAGATGCGCCCTCTGTAGTTGAACTATCTAGTGTTGACAATATTTATGGCAATGAAAGGTTACCTGCCTCATCCCTGGAAAAGAAAAATGAGGATTTATCCGGAATACCAGTTAATTGGAATGTTAAGCTTGGTGCACGTGAAATGATGCTTATAAATGGAATGAGGAATGATGAAAAGTCAAGTTCATGCTTAAACATGTGCCAACAGCCTTCTCTGAAAGAAGATCCATCTACCCACCCATTTGGTTTGACTGTTCCTTATACATCTCCAAATGAAAGAAATGGTCTAATTGGAGTAACTGGAAGTCATCCACAACAAACTCCACCACCACCTCACGGAAAGCAATTTAGTGGCCCAGTACATATTCCACTTGACTCATCAGGTGAAACACAGGTTCGAAATGGACGGCCTAGAGTAGATGCCCGAGGAAGAAACCAGTTACTGCCACGATACTGGCCCAGGTGTACTGATCAGGAGCTACAACAAATATCACTTGAGTATCCTCTAAATTACAAGTTCATGATTTTTCTAATGCATTGCCTTCTCCATGCTAGTGATGCTGGGAGAATTGGGCGTTTAGTGCTACCGAAAAAATGTGCTGAGGCGTACTTTCCACCAATTTCTCAGCCTGAAGGGTTGCCACTTAAAATCCTTGATGCAAAAGGAAAGGAATGGATATTTCAGTTTCGATTCTGGCCCAACAATAACAGTAGAATGTATGTTTTAGAGGGTGTAACTCCCTGCATACAGTCCATGCAATTGCAAGCAGGTGACACAGTAACATTTAGTCGGTTGGAGCCAGAGGGAAGGTTGGTTATGGGATTTCGAAAGGCTTCAAGTGCTACCCAATCTGATCAGGTTGAATTGGCAGATCCTAGTTCATGGTCTAAAGTTGACAAGTCAGGGTATATAGCAAAAGAAGCATTGGGGAGCAAATCTTCAATCTCTAGGAAGAGAAAGAGTAGCGCCTTGGGTTCAAAGAATAAACGTCTAAGAATTGAAAATGAGGATCTAATAGAGCTGAATATTACATGGGAAGAAGCTCAAGGCCTGCTCCGTCCCCCTCCTAACCATTTTCCCAGCATTGTGGTGATTGAAGGTTTTGAATTTGAGGAATACGAGGATGCTCCAGTGCTTGGGAAGCCAACGATTTTCACCACCAATAATGTGGGATCTGATGGATTTCTGCACATTTTTCAGAGAACTAGAAATATGTTATGTGCTATGAATAGCATTGCAAATTGGGAAAAAATGGAAAAAGTTGTTTTTGCTGTATTTGATTTGCTGGGTCATGATTCAAAGGCTAGTGCTCTTCTTCCATCAAGATGGACATGTTCTGATAATCCATGGGACCCAGAAAGATCTTGTTCAGCTGCACAAGAGCTGACAGTAGAACAGCTTGAAGATTTGCTACCCCCTTGTAATTCAGCTGTTTCCAAGAAAATGAAGGCCCCCAAGCAGGATCCTGATAATGTGGAAGCTTTGGAAGGACTTGACACACTTGCAAACCTAGCTATCTTGGGAGAGGGGGAGGCACTCCCAGCATCTGCCCAAGCCACAACAAGACACCCACGGCATAGACCTGGCTGCTCTTGCATTGTTTGCATTCAGCCTCCTAGTGGGAAGGGCCCCAAGCATAAGCAGACATGCACGTGCAATGTCTGCTTAACAGTGAAGCGCCGTTTCCGTACACTTATGTTACGCCGTGAGAAGAAACAATCAGAGAGAGAAGCAGAGACAACACGTAGAAGGCAGCAGCAACAGCAACCTCAGCAACCGCCACCTATGTCAGAGATATTGCTGGACGATGATTCTTTGCCTTGCAGTAACACAGCAGATAGTAGTCCAAACCAGAATAGGGAGGGCAACGATGGTTCTGATGATGACCCTAACAGGATAAAATCATCTGCCTCACCATTTAAAGGCCAAATCGACCTCAATATCCAGCCAGAGCGAGAGGAAGAGTTGTCACCTAGTTCAGATTCTGGGAGCACAATTAAGATGCTCCACGACGCAACTGAGAGGTATCTCAGGCAGCAGAGTATGTCAAACACTTTTACGGGAGATTCATCAGCCGTGCAGTCACAGCAAGTTGGAGGTGAAGTGAGTGAAGAGAAACTCTGCAATGGGGTAGTCCTTGGCAATAGTAACCATAATGCTGACAAGGAACATGCTCAAACTTTGTCTATGAATGTGTGA 2691 0.443 MATAPSSSSKVCYNSECKELKSDRPKKGWRLRTGEFSELCDRCGSVFEEGRFCEIFHLNASGWRTCETCGKGIHCGCIVSSTAFTLLDPGGIECITCARKNIILSSNVPWPPSFSLQNRLSEKISEKLRDLSAKNWSQLAGSGPVPWKQAPSLFNSVSSSDMHPDAPSVVELSSVDNIYGNERLPASSLEKKNEDLSGIPVNWNVKLGAREMMLINGMRNDEKSSSCLNMCQQPSLKEDPSTHPFGLTVPYTSPNERNGLIGVTGSHPQQTPPPPHGKQFSGPVHIPLDSSGETQVRNGRPRVDARGRNQLLPRYWPRCTDQELQQISLEYPLNYKFMIFLMHCLLHASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSATQSDQVELADPSSWSKVDKSGYIAKEALGSKSSISRKRKSSALGSKNKRLRIENEDLIELNITWEEAQGLLRPPPNHFPSIVVIEGFEFEEYEDAPVLGKPTIFTTNNVGSDGFLHIFQRTRNMLCAMNSIANWEKMEKVVFAVFDLLGHDSKASALLPSRWTCSDNPWDPERSCSAAQELTVEQLEDLLPPCNSAVSKKMKAPKQDPDNVEALEGLDTLANLAILGEGEALPASAQATTRHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEREAETTRRRQQQQQPQQPPPMSEILLDDDSLPCSNTADSSPNQNREGNDGSDDDPNRIKSSASPFKGQIDLNIQPEREEELSPSSDSGSTIKMLHDATERYLRQQSMSNTFTGDSSAVQSQQVGGEVSEEKLCNGVVLGNSNHNADKEHAQTLSMNV 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2479 896 ProSiteProfiles B3 DNA-binding domain profile. 342 443 IPR003340 GO:0003677
Glsi11g2479 896 SMART B3_2 342 443 IPR003340 GO:0003677
Glsi11g2479 896 Coils Coil 733 753 - -
Glsi11g2479 896 MobiDBLite consensus disorder prediction 771 785 - -
Glsi11g2479 896 MobiDBLite consensus disorder prediction 265 302 - -
Glsi11g2479 896 Gene3D - 317 446 IPR015300 -
Glsi11g2479 896 CDD B3_DNA 346 441 IPR003340 GO:0003677
Glsi11g2479 896 MobiDBLite consensus disorder prediction 730 829 - -
Glsi11g2479 896 SUPERFAMILY DNA-binding pseudobarrel domain 344 442 IPR015300 -
Glsi11g2479 896 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 9 556 - -
Glsi11g2479 896 MobiDBLite consensus disorder prediction 732 747 - -
Glsi11g2479 896 Pfam B3 DNA binding domain 347 441 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2479 Glsi-ChrGlsi11 17501066 17512064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2479 8 736 B3 DNA Binding Superfamily AT4G32010 40.397 1.98e-169 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Glsi11g2479 B3 8.4e-14 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g2479 11 17501066 17512064 Glsi11g2479 11 17501066 17512064 ECH