LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi11g2479	ATGGCAACTGCTCCGTCTTCTTCGTCCAAGGTTTGCTACAATTCAGAGTGCAAGGAATTGAAGTCAGACAGACCTAAGAAGGGCTGGAGGCTCCGTACCGGGGAGTTTTCCGAGCTTTGTGATCGATGCGGTTCTGTTTTCGAAGAAGGAAGATTCTGTGAGATTTTTCACTTGAATGCTTCTGGTTGGAGGACTTGTGAGACTTGTGGGAAGGGTATTCATTGTGGGTGCATTGTTTCAAGTACTGCCTTCACGTTGTTGGATCCTGGAGGCATAGAATGCATTACATGTGCCAGGAAGAATATTATTTTGTCATCCAATGTGCCTTGGCCACCATCTTTTTCTCTTCAAAATCGTTTATCTGAGAAAATATCTGAGAAACTTAGAGACCTGTCTGCAAAAAATTGGAGTCAATTAGCTGGATCAGGTCCTGTACCATGGAAGCAAGCACCCAGTCTGTTCAATTCGGTTTCTTCATCTGACATGCACCCAGATGCGCCCTCTGTAGTTGAACTATCTAGTGTTGACAATATTTATGGCAATGAAAGGTTACCTGCCTCATCCCTGGAAAAGAAAAATGAGGATTTATCCGGAATACCAGTTAATTGGAATGTTAAGCTTGGTGCACGTGAAATGATGCTTATAAATGGAATGAGGAATGATGAAAAGTCAAGTTCATGCTTAAACATGTGCCAACAGCCTTCTCTGAAAGAAGATCCATCTACCCACCCATTTGGTTTGACTGTTCCTTATACATCTCCAAATGAAAGAAATGGTCTAATTGGAGTAACTGGAAGTCATCCACAACAAACTCCACCACCACCTCACGGAAAGCAATTTAGTGGCCCAGTACATATTCCACTTGACTCATCAGGTGAAACACAGGTTCGAAATGGACGGCCTAGAGTAGATGCCCGAGGAAGAAACCAGTTACTGCCACGATACTGGCCCAGGTGTACTGATCAGGAGCTACAACAAATATCACTTGAGTATCCTCTAAATTACAAGTTCATGATTTTTCTAATGCATTGCCTTCTCCATGCTAGTGATGCTGGGAGAATTGGGCGTTTAGTGCTACCGAAAAAATGTGCTGAGGCGTACTTTCCACCAATTTCTCAGCCTGAAGGGTTGCCACTTAAAATCCTTGATGCAAAAGGAAAGGAATGGATATTTCAGTTTCGATTCTGGCCCAACAATAACAGTAGAATGTATGTTTTAGAGGGTGTAACTCCCTGCATACAGTCCATGCAATTGCAAGCAGGTGACACAGTAACATTTAGTCGGTTGGAGCCAGAGGGAAGGTTGGTTATGGGATTTCGAAAGGCTTCAAGTGCTACCCAATCTGATCAGGTTGAATTGGCAGATCCTAGTTCATGGTCTAAAGTTGACAAGTCAGGGTATATAGCAAAAGAAGCATTGGGGAGCAAATCTTCAATCTCTAGGAAGAGAAAGAGTAGCGCCTTGGGTTCAAAGAATAAACGTCTAAGAATTGAAAATGAGGATCTAATAGAGCTGAATATTACATGGGAAGAAGCTCAAGGCCTGCTCCGTCCCCCTCCTAACCATTTTCCCAGCATTGTGGTGATTGAAGGTTTTGAATTTGAGGAATACGAGGATGCTCCAGTGCTTGGGAAGCCAACGATTTTCACCACCAATAATGTGGGATCTGATGGATTTCTGCACATTTTTCAGAGAACTAGAAATATGTTATGTGCTATGAATAGCATTGCAAATTGGGAAAAAATGGAAAAAGTTGTTTTTGCTGTATTTGATTTGCTGGGTCATGATTCAAAGGCTAGTGCTCTTCTTCCATCAAGATGGACATGTTCTGATAATCCATGGGACCCAGAAAGATCTTGTTCAGCTGCACAAGAGCTGACAGTAGAACAGCTTGAAGATTTGCTACCCCCTTGTAATTCAGCTGTTTCCAAGAAAATGAAGGCCCCCAAGCAGGATCCTGATAATGTGGAAGCTTTGGAAGGACTTGACACACTTGCAAACCTAGCTATCTTGGGAGAGGGGGAGGCACTCCCAGCATCTGCCCAAGCCACAACAAGACACCCACGGCATAGACCTGGCTGCTCTTGCATTGTTTGCATTCAGCCTCCTAGTGGGAAGGGCCCCAAGCATAAGCAGACATGCACGTGCAATGTCTGCTTAACAGTGAAGCGCCGTTTCCGTACACTTATGTTACGCCGTGAGAAGAAACAATCAGAGAGAGAAGCAGAGACAACACGTAGAAGGCAGCAGCAACAGCAACCTCAGCAACCGCCACCTATGTCAGAGATATTGCTGGACGATGATTCTTTGCCTTGCAGTAACACAGCAGATAGTAGTCCAAACCAGAATAGGGAGGGCAACGATGGTTCTGATGATGACCCTAACAGGATAAAATCATCTGCCTCACCATTTAAAGGCCAAATCGACCTCAATATCCAGCCAGAGCGAGAGGAAGAGTTGTCACCTAGTTCAGATTCTGGGAGCACAATTAAGATGCTCCACGACGCAACTGAGAGGTATCTCAGGCAGCAGAGTATGTCAAACACTTTTACGGGAGATTCATCAGCCGTGCAGTCACAGCAAGTTGGAGGTGAAGTGAGTGAAGAGAAACTCTGCAATGGGGTAGTCCTTGGCAATAGTAACCATAATGCTGACAAGGAACATGCTCAAACTTTGTCTATGAATGTGTGA	2691	0.443	MATAPSSSSKVCYNSECKELKSDRPKKGWRLRTGEFSELCDRCGSVFEEGRFCEIFHLNASGWRTCETCGKGIHCGCIVSSTAFTLLDPGGIECITCARKNIILSSNVPWPPSFSLQNRLSEKISEKLRDLSAKNWSQLAGSGPVPWKQAPSLFNSVSSSDMHPDAPSVVELSSVDNIYGNERLPASSLEKKNEDLSGIPVNWNVKLGAREMMLINGMRNDEKSSSCLNMCQQPSLKEDPSTHPFGLTVPYTSPNERNGLIGVTGSHPQQTPPPPHGKQFSGPVHIPLDSSGETQVRNGRPRVDARGRNQLLPRYWPRCTDQELQQISLEYPLNYKFMIFLMHCLLHASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSATQSDQVELADPSSWSKVDKSGYIAKEALGSKSSISRKRKSSALGSKNKRLRIENEDLIELNITWEEAQGLLRPPPNHFPSIVVIEGFEFEEYEDAPVLGKPTIFTTNNVGSDGFLHIFQRTRNMLCAMNSIANWEKMEKVVFAVFDLLGHDSKASALLPSRWTCSDNPWDPERSCSAAQELTVEQLEDLLPPCNSAVSKKMKAPKQDPDNVEALEGLDTLANLAILGEGEALPASAQATTRHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEREAETTRRRQQQQQPQQPPPMSEILLDDDSLPCSNTADSSPNQNREGNDGSDDDPNRIKSSASPFKGQIDLNIQPEREEELSPSSDSGSTIKMLHDATERYLRQQSMSNTFTGDSSAVQSQQVGGEVSEEKLCNGVVLGNSNHNADKEHAQTLSMNV	896

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi11g2479	896	ProSiteProfiles	B3 DNA-binding domain profile.	342	443	IPR003340	GO:0003677
	Glsi11g2479	896	SMART	B3_2	342	443	IPR003340	GO:0003677
	Glsi11g2479	896	Coils	Coil	733	753	-	-
	Glsi11g2479	896	MobiDBLite	consensus disorder prediction	771	785	-	-
	Glsi11g2479	896	MobiDBLite	consensus disorder prediction	265	302	-	-
	Glsi11g2479	896	Gene3D	-	317	446	IPR015300	-
	Glsi11g2479	896	CDD	B3_DNA	346	441	IPR003340	GO:0003677
	Glsi11g2479	896	MobiDBLite	consensus disorder prediction	730	829	-	-
	Glsi11g2479	896	SUPERFAMILY	DNA-binding pseudobarrel domain	344	442	IPR015300	-
	Glsi11g2479	896	PANTHER	B3 DOMAIN-CONTAINING PROTEIN OS07G0563300	9	556	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi11g2479	Glsi-ChrGlsi11	17501066	17512064	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi11g2479	8	736	B3 DNA Binding Superfamily	AT4G32010	40.397	1.98e-169	510

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Glsi11g2479		B3	8.4e-14	CL0405

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi11g2479	11	17501066	17512064	Glsi11g2479	11	17501066	17512064	ECH

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