Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2450 ATGGCGGACGAGGGCTTCGACTACTCGGAACTAGCTGAAGGGGATGCTGATGATAAGTTGTTTATAGATCTTGACACCGTTTTGAATGTTCTTGATGAGGATTCCGGTCCTTCGGAGGTACGGCTTCGAATTGATTTGCCACTTTCATTGAAAAGGACTATTGCACCAGTAAGACAGTGCAAATTTCAGAGTAGTCCCGAGGGTTCTTCATTAAAAAATGTATCACCTGGCGAATCTAGCATCCATGATAATTTTCAGCTTCAGAGTGCCATATGCTTCTCTACACTCAACTCACATGCATCAGAATCTGGGATCAGGGCCTCAGTTGGTTTATTTTATTTTTCAGGCAATTCTGTTCTTTACTGTGAACATGAAAACCAAGGACCTCTTTCACAGACTTGCTCCTCCTCGCATGCTCTCCCTGGTAGTTTCAGGCACTTAGATTCTCTGGATGAAAGTAATGAAATTTGCTACACAGAAAGAATGGGAGTTTCGGGATGTGAGATTCCTGCTCATACTGTGGAACCTAGTTTCCCCGGGGCACATTTCAGCAATAAATCAGTTTGTGAAGATAATTTGAATTTGAATCTTCTATGGAAGGGTGAAAGTGCAAGCCAGTTCAAGCATGTGGGAGAGGATGTTGAATCTGAATATGCTTCATACTGCCCAATCATAGAGAATGCTGATGTAAATTTGGCACATTTTGGACCTTTTGATGAAGATATGATTGAAGGAGTTTCTGGGCAACAGGAAAATGACTCATGTTCATCTTTTGAAATATCATTCATGGATACTGATAGAGGTTCACATATTGCAACTTCAACCAACTCTACTATTTGCCAAGGTTCCAATGTTCATAGTGATTATATTGACTACTTTTCATCCTTGCATAGTTGCAAGGGTATAGATGATAGACCATTTGTTGCTGACTCATCACTTGGTTATTTGCCTAATGGCGTTGGTTCTCAATTTTGGCCAAATGAAGAAATAATGGCCAATGTGAAGGTTGAAAATGTGGAATATTTAGCTGATACCTCACGGGTGAGTAGTAACGTGCATTCTAGTTCTGCTGGGGGCGTACCGTTTCAAGACAATCAATTTATGTCAGCTGATAGTGACTTTTCTTCATTTTTTACTGGTAATGCTTCATTCAAACCAAGTGAAGACCAAGCAATTTGTTGCAAAGGTGAAAGAAATGAACTGATTACATCTTACCAGAATTCTCCTTATGCTGATTATACCGAGGTTAATGTAGGCCAAGAGATGAAACAGTTACCTAGTGCTTTTCCTTCTACTGGATATCATGGATTTGGTTTGTTAAATTGTGAGGATAAAGATACAGATATATTGTACAACCTACCTTATCATTATCAAGAAATGATGGATGGTACTGTTAGTAAATTTTCAGGGGACACAGCCAATTTGAATTTACAAGCCTTAGACAAATCTTTGCTTCATGCCCAGGCATCAATTGCTAGTGATTCTCATATGTCAAAAGTAAGCAATGAACTGGTTCACAGAGATTTCCTAGAAAAATCCCATGTTGAGGATGATGACTCTGATATTTGCATTATTGAAGACATCAGCCACCCTGCACCTACAAGTCAATCTGCAGACATTGGGAATTCCCTTAGTATATCACAGTGTTCTGCATATGGTAATTCACATCCTTCTATGTTGAGAGGCACAAGGCCGAAGGCATGTGATGAGCAATATATATTACGAGTTGCCCTGCAGGATCTGTCTCAGCCAAAGTCAGAAGTTAGACCTCCTGACGGATTGATGGCCGTTCCTCTTTTAAGACATCAGAGAATTGCTTTGTCGTGGATGGTTCAAAAGGAAACATCAACTTTATACTGCACTGGAGGAATTCTTGCAGACGATCAGGGACTTGGAAAAACGGTGTCCACTATTGCTTTAATATTAAAGGAAAGACCTCCAACAATTAGAGCTTGCCACAGTACGAAAAAGGGTGAATTAGAAACTTTGAATCTGGATGCGGATGATGACAACCTTGCTGAGAGTTGTGGAGTGAAGAAAGAAACTGATATGTGTCAGGATATGTCAGATAGATGTCCAATTGAAAACATGAATTCATTGTTGCAAACAAAGGGAAGGCCATCTGCAGGAACACTTATTGTTTGTCCCACTAGTGTTCTACGGCAATGGGCTGAAGAGTTGCATAATAAGGTAACCAGCGAAGCAAATCTCTCTGTACTAGTGTACCATGGAAGCAATCGAACGAAAGATCCTTATGAGCTAACCAAGTATGACGTTGTTCTGACAACTTATTCAATTGTCAGCATGGAGGTACCTAAGCAGCCTCTGGTTGACAAAGATGATGAAGAGAAAGGAAATTCTGAAGTTCATACTGAGCCGCCGAGTAAGAAGAGGAAATGCCCTCCTAGTTCTTGTAGAAGTGGCAAGAAGGGATTAGACAGCACATTACTTGAGGCTTCTGCTCGCCCTCTAGCAAAAGTGGCATGGTTTAGGGTTGTCTTGGATGAGGCCCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGTGCAAAGCGGAGATGGTGCTTGTCTGGGACTCCTATCCAGAATGCTATTGATGATCTTTACAGTTACTTTAGATTTCTCAGATATGACCCTTATGCTGTCTACACAACATTCTGTTCTACAATTAAGATCCCAATCAGTAGAAATCCAAACAAAGGGTATAGAAAGCTACAAGCTGTCTTAAAGACGATAATGTTACGTCGGACCAAAGGCACACTGCTTGATGGGGAACCTATTATTACCCTGCCACCTAAATCTATAGAGCTTAAAAAAGTGGAATTTTCAAGGGAGGAGCGCGATTTCTATTCCAGACTAGAGGCTGATTCTCGTGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTCAAGCAAAATTATGTCAACATTTTGCTAATGCTCTTGCGCCTTCGACAAGCTTGTGATCACCCTTTGCTTGTTAAGCGCTACAATTCTAAGTCTTTATGGAGATCATCAGTTGAGGTGGCAAAGAAGCTTTCTCGAGAAAAACAAATCTCTCTTCTGAAATGTTTAGAGGCTTCCTTGGCTCTCTGTGGTATCTGTAATGATCCTCCTGAAGATGCTGTTGTTTCAGTTTGCGGACATGTTTTTTGTAACCAGTGCATTTGTGAACATCTTACTGGTGATGACAATCAGTGCACTGCTACAAATTGCAAAGCTCGATTGAGCATGTCTTCAGTGTTTTCCAGATCCACATTGAATTGTTCTCTTTCTGATGAGGCCAGTGACAGTTTGCTTGGTTGCTCTGGTTCTGAAGTGGAGGGGTATGAACCTTGTTCTCAGAGTCAGCCGTGTGATTCTTCAAAAATTAAGGCTGCTCTTGAGGTGTTGAACTCATTGTGTAAACCACAGGGTCATGCATCAAGAAATATTTCTATGCAGATAACTTCTGAGGAAAGCAGTAACTGCCCTGGGAACTCGGATGATAACAAGGTGAAATCTTTCAAGGATTTTCCTGAGAGTCAAAAAGTGTCTGGGGATGGAAGCTCTAATGATTTAATTTCTGTTGTAAGAGAGAAAGCTATTGTGTTTTCTCAGTGGACGAGGATGTTAGATTTGCTTGAAGTGTGCCTTAAGAATTCTTCAATTCAGTATAGAAGGCTTGATGGAACAATGTCAGTTGTTGCAAGAGATAAAGCTGTTAAAGATTTTAATACTCTCCCAGAGGTAACTGTTATGATTATGTCTTTGAAAGCTGCCAGTCTTGGTCTCAACATGGTAGCGGCCTGCCATGTTCTGTTGCTTGATTTATGGTGGAATCCTACAACTGAAGATCAAGCAATAGACAGAGCACATCGAATTGGGCAGACTCGCCCTGTAACTGTTCTGCGGTTAACTGTGAGAGATACAGTTGAAGATCGTATTTTAGCTCTTCAGCAAAAGAAGCGAAAGATGGTGGCATCTGCTTTTGGAGAAGATGGAACCGGCGGTCGTCAAAGTCGCCTCACAGTGGATGATTTAAAATACTTGTGTCATTATAGCTTTGTTCTTGAAGGCAGCAGAAGAAACAACAGGACATTTTCTAACAATGGATCAACAGGAGTGAAAAGGGCTCTGTTGACGCTTGACATGAAGATTATGTGA 4164 0.4109 MADEGFDYSELAEGDADDKLFIDLDTVLNVLDEDSGPSEVRLRIDLPLSLKRTIAPVRQCKFQSSPEGSSLKNVSPGESSIHDNFQLQSAICFSTLNSHASESGIRASVGLFYFSGNSVLYCEHENQGPLSQTCSSSHALPGSFRHLDSLDESNEICYTERMGVSGCEIPAHTVEPSFPGAHFSNKSVCEDNLNLNLLWKGESASQFKHVGEDVESEYASYCPIIENADVNLAHFGPFDEDMIEGVSGQQENDSCSSFEISFMDTDRGSHIATSTNSTICQGSNVHSDYIDYFSSLHSCKGIDDRPFVADSSLGYLPNGVGSQFWPNEEIMANVKVENVEYLADTSRVSSNVHSSSAGGVPFQDNQFMSADSDFSSFFTGNASFKPSEDQAICCKGERNELITSYQNSPYADYTEVNVGQEMKQLPSAFPSTGYHGFGLLNCEDKDTDILYNLPYHYQEMMDGTVSKFSGDTANLNLQALDKSLLHAQASIASDSHMSKVSNELVHRDFLEKSHVEDDDSDICIIEDISHPAPTSQSADIGNSLSISQCSAYGNSHPSMLRGTRPKACDEQYILRVALQDLSQPKSEVRPPDGLMAVPLLRHQRIALSWMVQKETSTLYCTGGILADDQGLGKTVSTIALILKERPPTIRACHSTKKGELETLNLDADDDNLAESCGVKKETDMCQDMSDRCPIENMNSLLQTKGRPSAGTLIVCPTSVLRQWAEELHNKVTSEANLSVLVYHGSNRTKDPYELTKYDVVLTTYSIVSMEVPKQPLVDKDDEEKGNSEVHTEPPSKKRKCPPSSCRSGKKGLDSTLLEASARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTTFCSTIKIPISRNPNKGYRKLQAVLKTIMLRRTKGTLLDGEPIITLPPKSIELKKVEFSREERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSKSLWRSSVEVAKKLSREKQISLLKCLEASLALCGICNDPPEDAVVSVCGHVFCNQCICEHLTGDDNQCTATNCKARLSMSSVFSRSTLNCSLSDEASDSLLGCSGSEVEGYEPCSQSQPCDSSKIKAALEVLNSLCKPQGHASRNISMQITSEESSNCPGNSDDNKVKSFKDFPESQKVSGDGSSNDLISVVREKAIVFSQWTRMLDLLEVCLKNSSIQYRRLDGTMSVVARDKAVKDFNTLPEVTVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVASAFGEDGTGGRQSRLTVDDLKYLCHYSFVLEGSRRNNRTFSNNGSTGVKRALLTLDMKIM 1387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2450 1387 ProSitePatterns Zinc finger RING-type signature. 1053 1062 IPR017907 -
Glsi11g2450 1387 ProSiteProfiles Zinc finger RING-type profile. 1038 1073 IPR001841 -
Glsi11g2450 1387 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1189 1348 IPR001650 -
Glsi11g2450 1387 SMART helicmild6 1212 1295 IPR001650 -
Glsi11g2450 1387 MobiDBLite consensus disorder prediction 1155 1169 - -
Glsi11g2450 1387 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 462 1351 - -
Glsi11g2450 1387 MobiDBLite consensus disorder prediction 1155 1174 - -
Glsi11g2450 1387 CDD DEXDc_SHPRH-like 599 922 - -
Glsi11g2450 1387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1031 1088 IPR013083 -
Glsi11g2450 1387 MobiDBLite consensus disorder prediction 775 799 - -
Glsi11g2450 1387 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 585 922 IPR027417 -
Glsi11g2450 1387 SMART ultradead3 595 899 IPR014001 -
Glsi11g2450 1387 Pfam Helicase conserved C-terminal domain 1195 1295 IPR001650 -
Glsi11g2450 1387 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 692 780 - -
Glsi11g2450 1387 Gene3D - 570 659 IPR038718 -
Glsi11g2450 1387 Gene3D - 672 781 IPR038718 -
Glsi11g2450 1387 Gene3D - 812 923 IPR038718 -
Glsi11g2450 1387 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 614 884 IPR014001 -
Glsi11g2450 1387 Pfam SNF2-related domain 619 999 IPR000330 GO:0005524|GO:0140658
Glsi11g2450 1387 MobiDBLite consensus disorder prediction 775 811 - -
Glsi11g2450 1387 CDD SF2_C_SNF 1198 1305 - -
Glsi11g2450 1387 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 804 934 - -
Glsi11g2450 1387 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 930 1353 IPR027417 -
Glsi11g2450 1387 Gene3D - 1089 1362 IPR027417 -
Glsi11g2450 1387 SUPERFAMILY RING/U-box 1035 1080 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2450 Glsi-ChrGlsi11 17273929 17284832 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2450 308 1350 RAD5 or RAD16-like Gene Family AT1G61140 53.555 0.0 978
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Glsi11g2450 SNF2_N 2.7e-68 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g2450 11 17273929 17284832 Glsi11g2450 11 17273929 17284832 CCT