Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2409 ATGAGTTGTGGCTGCTTTGGAGCCTCAACTATAAAGAGGAAAAGGAGTCCCTCTCACACTCCTCATGAAATTGATGGCAGTCCGCTTGATAATGTTAGGAATTTCTCCGATAAAGAACTAAGGCAGGCAACTGATAATTATGACTCAAGAAACAAGATAGGACGAGGGGGTTTTGGAACTGTTTACCAGGGGACCTTAAAAGATGGAAGACAGGTAGCAGTGAAGACCCTTTCTACTGGATCAAAGCAGGGAGTTCGTGAATTTTTAACTGAAATTAATACTATATCAAATGTTAAGCATCCAAACCTTGTTGAATTGATCGGCTGCTGTGTTCAAGGACCTAGTCGTATTTTAGTCTACGAGTATGTGGAAAATAACAGCCTTGATCGTGCCTTACTTGCCACAAGGAGTACAAGCATCAAACTAGACTGGAGAAAAAGATCTGCTATCTGCATGGGTACTGCTAAGGGTCTTGCATTCCTTCACGAAGAACTTGTGCCACACATTGTGCACAGAGACATCAAAGCTAGCAATGTACTACTTGACCAAGATTTTAATCCGAAAATAGGAGATTTTGGGTTGGCTAAATTATTCCCAGATGATATCACTCACATTAGCACTAGAATTGCTGGAACAACCGGTTATCTAGCACCGGAATATGCTTTAGGGGGGCAGCTAACCATGAAGGCTGATGTATACAGCTTTGGAGTTCTTATACTAGAAATAGTTAGTGGCAAAAGCAGTGCAAAGACAAATTGGGGAGGGACACAGAAATTACTCTTGGAATGGGCCTGGCAACTTCATGAAGAGGGAAAACTCTTGGAGCTTGTGGATCCAGACATTGAAGAATTTCCTGAGGAAGAAGTAATTAGATACATGAAGGTGGCTTTTTTCTGCACCCAGGCAGCAGCAAACCGAAGACCATTGATGTCCCAGGTTGTCAATATGCTCTCCAGGAAAATCCGGCTCAACGAGAAGGAACTTACAGCACCAGGATTCTTCCTGGAAGAATCCTCTGTAAAGAAGTCATCTGCTGACTCTTCAAGTTCTCAAATTAGCTCTACTCCTGTCACTATTACTCAGGTGACACCAAGATGA 1098 0.4262 MSCGCFGASTIKRKRSPSHTPHEIDGSPLDNVRNFSDKELRQATDNYDSRNKIGRGGFGTVYQGTLKDGRQVAVKTLSTGSKQGVREFLTEINTISNVKHPNLVELIGCCVQGPSRILVYEYVENNSLDRALLATRSTSIKLDWRKRSAICMGTAKGLAFLHEELVPHIVHRDIKASNVLLDQDFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTMKADVYSFGVLILEIVSGKSSAKTNWGGTQKLLLEWAWQLHEEGKLLELVDPDIEEFPEEEVIRYMKVAFFCTQAAANRRPLMSQVVNMLSRKIRLNEKELTAPGFFLEESSVKKSSADSSSSQISSTPVTITQVTPR 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2409 365 Gene3D Transferase(Phosphotransferase) domain 1 123 331 - -
Glsi11g2409 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Glsi11g2409 365 MobiDBLite consensus disorder prediction 342 365 - -
Glsi11g2409 365 CDD STKc_IRAK 53 319 - -
Glsi11g2409 365 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Glsi11g2409 365 SUPERFAMILY Protein kinase-like (PK-like) 29 349 IPR011009 -
Glsi11g2409 365 SMART serkin_6 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g2409 365 MobiDBLite consensus disorder prediction 1 33 - -
Glsi11g2409 365 Pfam Protein tyrosine and serine/threonine kinase 50 317 IPR001245 GO:0004672|GO:0006468
Glsi11g2409 365 ProSiteProfiles Protein kinase domain profile. 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g2409 365 FunFam cold-responsive protein kinase 1 18 122 - -
Glsi11g2409 365 Gene3D Phosphorylase Kinase; domain 1 19 122 - -
Glsi11g2409 365 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 31 350 - -
Glsi11g2409 365 FunFam Putative LRR receptor-like serine/threonine-protein kinase 123 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2409 Glsi-ChrGlsi11 16898512 16903982 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2409 10 364 Receptor kinase-like Gene Family AT1G56120 48.045 3.65e-110 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi11g2409 PK_Tyr_Ser-Thr 1.5e-46 CL0016