Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2405 ATGACATGTGAGACCGTTCATTTCCTTATTTTTCCCGTTTCTTCTACTAATATCTACTGCTATTCCAATCATTTTGTTGGCGCCCTTCGCTTGGTTCATTCGTCTCCTCCTCCTTTGCTTGTCTTTTTATGTTTACTGTATATTGTAATCTTACTGATTGAATCTGGGAGCCTCGAACTACGAATTTGGATGCCTCAAAATTTGGAAAAAGAGGACTTAGGGTTCATTAGGGTTTCAGATTCCAGAGCAGTAATGTCTGAATCCGAACATAACGCCTCTTTTCTCCATAAAAATGGTCATCGTGGCGGTGGATCTCCTGACAGTGGCAATCGCGACAAGGCCAATTATCGTGGATCTGATCATGAGAGGTCAAGGATGAGAAGGCGAGATGGAGACAGAAAATCTTTTCATGAGCGCCATAACAGGGACTATAAGGATGAAGGCTTTAGGAGAAGGGGCAAATATGACAATTACAATCGTCATCAGATCCATGATTATGACAGGCATCGAAGTGATGTTCGAGACGGAGAAACAAGGCATAGATATGGAGCCCAGTCAAGTTACAGATCCAAGAGGGAATCTAGATCACGCTCTAGATCCCCTTCTCATTCAGAAAGCAAAAGGACCAGTGGTTTTGACATGGCACCACCTGCTGCAGCTGGAATTCCCGCTGTTTCAGGGCAAATGCTGGGTATTACTCATCCAGGAATTGTGCATAATTTGCCACAAGTTGGGATGTCGCAGATTGGAGCACTTTCCTTGATGCCAGTTCAACCTATGATGCAGCAGGCTACAAGGCATGCACGGCGAGTTTACGTTGGTGGGCTTCCCCCTTTGACTAATGAGCAGGCAATTGCAACGTTCTTCAGCCATGTTATGACTGCTATTGGGGGAAATTCTGCTGGTGCAGGTGATTCTGTTGTCAATGTATACATTAATCATGAGAAGAAATTTGCATTTGTGGAGATGAGAACTGTTGAAGAAGCTAGTAATGCAATGGCATTAGATGGAATAATATTTGAGGGAGTTGCTGTGCGGGTTCGTAGGCCTACAGACTATAATCCTTCATTAGCTGCAGCTTTAGGTCCTGGCCAACCGAGTCCATACCTTAACTTATCTGCTGTTGGTCTTGCTGCAGGTGCAATTGGTGGAACTGAGGGACCTGACCGCATCTTTGTGGGTGGGCTACCATACTACTTTAGTGAAGAACAAATAAGAGAATTGCTCCAAGCTTTTGGACCTCTCAGATCCTTTGATCTAGTTAGAGATAAAGACACTGGAAATTCTAAAGGATATGGTTTCTGCATCTATCAGGATCCAGCTGTAACGGACATTGCTTGTGCCTCTCTGAATGGCCTTAAAATGGGTGACAAAACACTGACTGTTCGGCGTGCGACGGTCAGTGGACAGTCTAAATCAGAACACGAACATATTTTGGCGCGGGCACAACAGCATATAGTTATGCAGAAATTAGCCTTGGAAGCTGGTGGGTTGAATATTCCAGGAGTGGAGAGAGCACTGACAATGCATGATGAAACCGCCACTAAAGTTTTATGTTTGACTGAGGCTGTTACTGTGGATCAACTGAGGGATGATGAAGAGTATGAAGAAATATTGGAAGACATGCGGGATGAATGCGGCAAATTCGGGACCTTGATAAATGTCGTTATTCCTCGTCCAAATCACATTGGAGAACCTACCTCAGGTGTTGGAAAGGTGTTTTTGGAATACTCTGATAGCTCTGGTTGTTTCACTGCTAAAAATGCACTGAATGGGAGGAAATTTGGAGGCAATGTTGTGAATGCCGTTTATTATTCCGAAGACAAATATAATAGCATGGAGTATGATGTATAA 1854 0.438 MTCETVHFLIFPVSSTNIYCYSNHFVGALRLVHSSPPPLLVFLCLLYIVILLIESGSLELRIWMPQNLEKEDLGFIRVSDSRAVMSESEHNASFLHKNGHRGGGSPDSGNRDKANYRGSDHERSRMRRRDGDRKSFHERHNRDYKDEGFRRRGKYDNYNRHQIHDYDRHRSDVRDGETRHRYGAQSSYRSKRESRSRSRSPSHSESKRTSGFDMAPPAAAGIPAVSGQMLGITHPGIVHNLPQVGMSQIGALSLMPVQPMMQQATRHARRVYVGGLPPLTNEQAIATFFSHVMTAIGGNSAGAGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPSLAAALGPGQPSPYLNLSAVGLAAGAIGGTEGPDRIFVGGLPYYFSEEQIRELLQAFGPLRSFDLVRDKDTGNSKGYGFCIYQDPAVTDIACASLNGLKMGDKTLTVRRATVSGQSKSEHEHILARAQQHIVMQKLALEAGGLNIPGVERALTMHDETATKVLCLTEAVTVDQLRDDEEYEEILEDMRDECGKFGTLINVVIPRPNHIGEPTSGVGKVFLEYSDSSGCFTAKNALNGRKFGGNVVNAVYYSEDKYNSMEYDV 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2405 617 Gene3D - 264 362 IPR012677 -
Glsi11g2405 617 MobiDBLite consensus disorder prediction 160 217 - -
Glsi11g2405 617 FunFam U2 snRNP auxiliary factor large subunit 511 616 - -
Glsi11g2405 617 CDD RRM2_U2AF65 389 465 - -
Glsi11g2405 617 SUPERFAMILY RNA-binding domain, RBD 390 610 IPR035979 GO:0003676
Glsi11g2405 617 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 352 IPR000504 GO:0003723
Glsi11g2405 617 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 111 615 IPR006529 GO:0003723|GO:0005634|GO:0006397
Glsi11g2405 617 MobiDBLite consensus disorder prediction 93 148 - -
Glsi11g2405 617 CDD RRM1_U2AF65 268 350 - -
Glsi11g2405 617 PANTHER RNA-BINDING PROTEIN 97 615 - -
Glsi11g2405 617 FunFam U2 snRNP auxiliary factor large subunit 264 365 - -
Glsi11g2405 617 SUPERFAMILY RNA-binding domain, RBD 254 355 IPR035979 GO:0003676
Glsi11g2405 617 Gene3D - 382 485 IPR012677 -
Glsi11g2405 617 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 389 467 IPR000504 GO:0003723
Glsi11g2405 617 Gene3D - 511 616 IPR012677 -
Glsi11g2405 617 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 522 607 IPR000504 GO:0003723
Glsi11g2405 617 CDD RRM3_U2AF65 515 600 - -
Glsi11g2405 617 SMART rrm2_1 518 603 IPR003954 GO:0003676
Glsi11g2405 617 MobiDBLite consensus disorder prediction 160 206 - -
Glsi11g2405 617 FunFam U2 snRNP auxiliary factor large subunit 366 478 - -
Glsi11g2405 617 MobiDBLite consensus disorder prediction 113 148 - -
Glsi11g2405 617 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 391 460 IPR000504 GO:0003723
Glsi11g2405 617 SMART rrm1_1 390 463 IPR000504 GO:0003723
Glsi11g2405 617 SMART rrm1_1 270 348 IPR000504 GO:0003723
Glsi11g2405 617 SMART rrm1_1 523 603 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2405 Glsi-ChrGlsi11 16849570 16859663 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2405 391 481 Eukaryotic Initiation Factors Gene Family AT1G22760 34.066 1.33e-07 52.8