Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2399 ATGTATATAGCTTCCATGCGAAAGTCTTTCAAGGACTCCTTGAAAGTGCTTGAAGCCGATATCCAGCATGCCAATACCCTGGCATCGGATTTTCCAAGGGAGTATGATGGTGCATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACACCTGTTTCTTTTCTTAGTGCAATGGACAGACTGTAATCTTGCTGGAGCCCTTGGACTGTTAAGAATCCTAATTTACAAGGTTTATGTGGATGGCACAACCACCATGTCCACACATGAAAGAAAAGCAAGCATTAGAGAATTCTATGCGGTTATATATCCCTCTTTATTGCAACTTCAAAAAGGTGTCACTGATACAGAGGATAAAAAACAGAAGGCTGTATGCATGGAGCGGTATCGAAGAAGAGATGATGAAGAACTTAGGCAATTTTCAGACATAGACATTGAAAGAGATGAAGAGTGCGGTATATGCATGGAGATGAGTAGTAAGATTGTGTTGCCCAACTGCAACCATGCCATGTGCTTGAAATGTTACCGAGAATGGCGAACAAGATCTCAGTCATGCCCCTTCTGCCGCGACAGCCTGAAGAGAGTGAACTCAGGGGATCTGTGGGTATTCACTGATAGTAGGGATATAGTAGACATGGCAACAGTGACAAGGGAGAATCTTAGAAGGCTTTTCATGTACATAGATAAGTTGCCTTTGATCGTTCCAGATTCCCTTTTTGACCCCTATGACTCTCACCTAAGATAA 744 0.4301 MYIASMRKSFKDSLKVLEADIQHANTLASDFPREYDGACLQMRMSYSPAAHLFLFLVQWTDCNLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLQKGVTDTEDKKQKAVCMERYRRRDDEELRQFSDIDIERDEECGICMEMSSKIVLPNCNHAMCLKCYREWRTRSQSCPFCRDSLKRVNSGDLWVFTDSRDIVDMATVTRENLRRLFMYIDKLPLIVPDSLFDPYDSHLR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2399 247 SUPERFAMILY RING/U-box 137 194 - -
Glsi11g2399 247 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Glsi11g2399 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 198 IPR013083 -
Glsi11g2399 247 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Glsi11g2399 247 FunFam RING/U-box superfamily protein 129 198 - -
Glsi11g2399 247 PANTHER RING FINGER PROTEIN 41, 151 8 245 - -
Glsi11g2399 247 SMART ring_2 151 188 IPR001841 -
Glsi11g2399 247 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2399 Glsi-ChrGlsi11 16811820 16816277 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2399 115 192 C3H Transcription Factor Family AT5G41350 30.864 5.92e-06 44.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g2399 11 16811820 16816277 Glsi11g2399 11 16811820 16816277 CCT