Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2389 ATGGCTGAAAACTTGTTGGAGCTCAACCACCATAGCTTCGGCAAGATAGTTGCCGCCGCCCCGGCTGGGCAGTCTCCGAGGCCGCGGTGCCCGGCGCCGTTTTTGTTGAAGACGTATGATTTGGTGGAAGAAGGTGGAGTGAATATCGGAGAAGATGATGAAGATGAAGATGAAGATAGCAAGAGAATTGTGTCATGGAATGTGGAAGGAGATGGTTTTGTTGTATGGTCTCCAGCAGAATTCTCAGAGCTCACCTTGCCTAGATATTTCAAGCACAACAACTTCTCCAGCTTCATTCGCCAATTGAATACCTATGGATTTAAAAAGGTATCATCCAAAAGATGGGAATTCAAGCACGAGAAATTCCAGAGGGGTTGCAAGCATTTGCTAGCGGAAATCATCAGAAAAAAGTGCGAGCCAAGCATCTTTCCTTCATACCTCAAATCTTGTTCGGAAGAAAATAATGCAGTGGGCTTTATTAAAGAAAACAGTAGTAGTCATCAATTGCTGATGGAGGAGAACAAGAACCTAAAGAAGGAGAGGTTGGAACTGCAGCTCCAGATTTCCCAATTCAAAGCACTAGAAATGAAGTTGTTGGAGTGTCTCTCACAATATATGAGCAGCCACCAAAATAAGATTAGGAGACTATCTCAAGTAGTAAGCCCAGTCTTAAACCCTAAACCCAAGTGCGACGGTCTCGCAAAGCCGATCATCAGTTCCTTTCTCAATTCACCCAGAAAATCTGTAGCCATGGAGTCGAAGCTCTTTCGTAGATTCGTGATGCAAAACGGGATTACGAGCAGATATTACTACACAAGCAGGACCAAGAAACCTACTCTATACTCGAAAATCAGTCCACTTGGGAATCCTAGCACAAGCGTGGCACCTGAGCTCGAGGATTGGGTCTACAAGGGGAACAAGGTCCGGGTAGCAGAGCTTCAGCGCATCATTCGCGATCTTCGCAAGCGCAGGAGGTTCACACAAGCTCTAGAGGTATCTGAGTGGATGCATAAGAATGGTGTATGCATATTTTCACCTACTGAACATGCGGTGCATTTGGATTTGATTGGCAAGGTTCATGGATACCCTCATGCAGAAAGCTATTTTAATAGTTTGAAGGACCAAGAGAAAAATGATAAGACATATGGTGCTCTCTTGAATTGTTATGCTCGGCAGCGCCAAACTGATAAGGCCCTCTCCCATTTGCAGAAAATGAAGGAGTTGGGGTTGGCTTCATCACCTCTAACTTACAATGATATTATGTGCCTATACACTAATATTGGTCGGCATGAGAAGGTCCCTGATGTTCTGATTGAGATGAAAAAGAACAAAGTTTTGCCTGACAACTTCAGCTACAGAATCTGTATCAATTCATGTGGTGTGAAGTCTGATATTGATGGAATGGAAAAAACATTAAAAGAGATGGAAAGCCAATCTCACATTGTAATGGACTGGAACACTTATGCTGTTGTTGCTAATTTCTATATAAAAGCAGGGCTTACGAGTAAGGCAGTTGATGCCCTAAAGAAATCAGAAGAGAGGCTGGATAAGAAAGATGGTCTAGGTTACAATCATCTTATCTCCCTCTTTGCTAGTCTAGGAAATAAGACTGAGGTGATAAGATTATGGGACTTGGAGAAGAGTGCTTGCAAGAGGTGCATAAATAGGGATTTCACTAACATGTTAGAATCTCTGGTAAGACTTGGTGAGCTGGATGATGCTGAGAAAGTACTGAAGGAGTGGGAATCCACTAGTAATCATTATGATTTTCAAATCCCAAATACTGTCCTTATTGGGTACTCAGGAAAAGGTATGCATGAGAAAGCAGAATCCATGCTTGAAGATTTACAGAAGAAGGGAAAGGCCACTGCCCCAGACAGTTGGATTGTAGTGGCAGGTGGATACATGCGTAAGGGTGAGATGGAGAATGCATTGCGGTGCTTAAATGCAGCCCTCTCTTCGAATGTGGACAATAAAGGATGGAAGCCTAATCCCAAGGTGGTCTCTCGCATAATGAATTGGCTTGGTGACAAAGGCAGCGTTGAAGATGTAGAAGCTTTGGTGAGGTCGTTAAGAAATGTCGTCCCAGTAAACAAACAAATGTATAATGCCCTAATCAAGGCTTATATAAGAGGTGGTAAAGAAGTGGATGGGCTTTTGGATCGCATGAAGAAAGATAACATTGATGAAGATGATGAAACTAAGGAGATTCTGAATACGAGGAAAGCGTAA 2232 0.4306 MAENLLELNHHSFGKIVAAAPAGQSPRPRCPAPFLLKTYDLVEEGGVNIGEDDEDEDEDSKRIVSWNVEGDGFVVWSPAEFSELTLPRYFKHNNFSSFIRQLNTYGFKKVSSKRWEFKHEKFQRGCKHLLAEIIRKKCEPSIFPSYLKSCSEENNAVGFIKENSSSHQLLMEENKNLKKERLELQLQISQFKALEMKLLECLSQYMSSHQNKIRRLSQVVSPVLNPKPKCDGLAKPIISSFLNSPRKSVAMESKLFRRFVMQNGITSRYYYTSRTKKPTLYSKISPLGNPSTSVAPELEDWVYKGNKVRVAELQRIIRDLRKRRRFTQALEVSEWMHKNGVCIFSPTEHAVHLDLIGKVHGYPHAESYFNSLKDQEKNDKTYGALLNCYARQRQTDKALSHLQKMKELGLASSPLTYNDIMCLYTNIGRHEKVPDVLIEMKKNKVLPDNFSYRICINSCGVKSDIDGMEKTLKEMESQSHIVMDWNTYAVVANFYIKAGLTSKAVDALKKSEERLDKKDGLGYNHLISLFASLGNKTEVIRLWDLEKSACKRCINRDFTNMLESLVRLGELDDAEKVLKEWESTSNHYDFQIPNTVLIGYSGKGMHEKAESMLEDLQKKGKATAPDSWIVVAGGYMRKGEMENALRCLNAALSSNVDNKGWKPNPKVVSRIMNWLGDKGSVEDVEALVRSLRNVVPVNKQMYNALIKAYIRGGKEVDGLLDRMKKDNIDEDDETKEILNTRKA 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2389 743 Gene3D Tetratricopeptide repeat domain 310 513 IPR011990 GO:0005515
Glsi11g2389 743 Coils Coil 310 330 - -
Glsi11g2389 743 Gene3D Tetratricopeptide repeat domain 541 655 IPR011990 GO:0005515
Glsi11g2389 743 Gene3D Tetratricopeptide repeat domain 656 740 IPR011990 GO:0005515
Glsi11g2389 743 FunFam Pentatricopeptide repeat-containing protein mitochondrial 310 521 - -
Glsi11g2389 743 FunFam Heat stress transcription factor A-6b 27 137 - -
Glsi11g2389 743 PANTHER OS12G0527900 PROTEIN 268 730 - -
Glsi11g2389 743 ProSitePatterns HSF-type DNA-binding domain signature. 86 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi11g2389 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 378 412 IPR002885 -
Glsi11g2389 743 SUPERFAMILY TPR-like 560 659 IPR011990 GO:0005515
Glsi11g2389 743 PRINTS Heat shock factor (HSF) domain signature 98 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi11g2389 743 PRINTS Heat shock factor (HSF) domain signature 85 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi11g2389 743 Gene3D - 28 137 IPR036388 -
Glsi11g2389 743 SMART hsfneu3 30 136 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi11g2389 743 Pfam PPR repeat 558 582 IPR002885 -
Glsi11g2389 743 Pfam PPR repeat 381 410 IPR002885 -
Glsi11g2389 743 Pfam PPR repeat 594 620 IPR002885 -
Glsi11g2389 743 Pfam PPR repeat 701 727 IPR002885 -
Glsi11g2389 743 SUPERFAMILY "Winged helix" DNA-binding domain 32 136 IPR036390 -
Glsi11g2389 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
Glsi11g2389 743 Pfam HSF-type DNA-binding 34 136 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi11g2389 743 SUPERFAMILY TPR-like 365 658 IPR011990 GO:0005515
Glsi11g2389 743 Pfam PPR repeat family 416 459 IPR002885 -
Glsi11g2389 743 Coils Coil 160 194 - -
Glsi11g2389 743 NCBIfam pentatricopeptide repeat 416 448 IPR002885 -
Glsi11g2389 743 NCBIfam pentatricopeptide repeat 381 410 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2389 Glsi-ChrGlsi11 16746152 16751654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2389 244 706 EF-hand Containing Proteins AT1G02150 34.755 4.16e-86 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Glsi11g2389 HSF_DNA-bind 1e-28 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g2389 11 16746152 16751654 Glsi11g2389 11 16746152 16751654 ECH