Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2388 ATGGCCTTTGAGCACTACTTTTCCCAGGAATGGAAAAGCATCCAAAGTGCTGTGACAGAGACAGAAAATGGCAATGGTTGTTTTGATTGCAACATATGCTTAGACTTTGCGCACGAACCAGTAGTCACCCTCTGTGGCCACCTTTACTGCTGGCCCTGCATCTACAAATGGCTCCATGTCCAAAGTTCTTCTCTTGCATCTGGTGAGCACCCACAATGCCCAGTCTGCAAGGCTAATATATCTAGCACCACAATGGTCCCACTTTATGGTCGCGGACAAGCCCCGACTCAAACTGAATGTGATGGGAAGGCATCATATCGAGATATTTTTATACCACCACGACCACCTGCTTTTGGTTCTCAAGATCTGATGGCATCAGCATCTCAAGGTGGTCTGCAGCTTCCACATCGTAATCCTTATCAGAGTCAACATTTCGGTTCTCCTCTATACCAAGCTGAAGATAATGCGTCACAAATGCTCAATCTCAGTGCCACCGTTGCTCCAGGATTCCACCACCCTGTGGTTGGGATGGTTGGAGATATGGTTTATGCTAGAGTGTTTGGAAACTCAGAAAATTTATACCCGAATTCTTATAACCTGATGGGAAGTAATAGCCCAAGATTGAGAAGGCAGGAGATGCAGGCAGAAAAGTCATTGAACAGAATTGTAATTTTCCTCTTTTGCTGCTTTCTTTTGTGTCTCCTGGTTTTTTGA 714 0.451 MAFEHYFSQEWKSIQSAVTETENGNGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSSSLASGEHPQCPVCKANISSTTMVPLYGRGQAPTQTECDGKASYRDIFIPPRPPAFGSQDLMASASQGGLQLPHRNPYQSQHFGSPLYQAEDNASQMLNLSATVAPGFHHPVVGMVGDMVYARVFGNSENLYPNSYNLMGSNSPRLRRQEMQAEKSLNRIVIFLFCCFLLCLLVF 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2388 237 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 131 - -
Glsi11g2388 237 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 8 234 IPR045103 GO:0005783|GO:0006511|GO:0061630
Glsi11g2388 237 CDD RING-HC_AtRMA-like 28 78 - -
Glsi11g2388 237 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Glsi11g2388 237 SUPERFAMILY RING/U-box 26 89 - -
Glsi11g2388 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 108 IPR013083 -
Glsi11g2388 237 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Glsi11g2388 237 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Glsi11g2388 237 SMART ring_2 30 76 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2388 Glsi-ChrGlsi11 16740088 16740801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2388 6 222 C3H Transcription Factor Family AT4G27470 42.342 6.90e-51 164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g2388 11 16740088 16740801 Glsi11g2388 11 16740088 16740801 ECH