Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2376 ATGATCGTCACCAACACGCCGTCGCAGGACCTCGCTCTCACCAATCTCGCCTTCTGCTCACCTTCTGATCTTCAGAACTTCGCCGTTCCTGGTTCCCATCGCATCTTCCTCGCTTTGGTGGGCGACTCCTTCGTCTTCTCTCTCGCATATCCTTTTCGTATTTGTAGGAATTTTGGTCATTTTTGTCCCATTGCTTTTATGAATTTTCTCGAACGATCAAGTGTTGACTCATTTTTTGGTCATATTGCACTGAATTCGATTCAACGTCGGTGTGCCAGAGTGTCTGCTGCTGAATCGGTACCTGTGAGCAGATTCTTGCCACCTGACAATTTCAACCTGGCCATGCTAACCCTTGAATTGGACTTCATTAAAAGGGGAAGTAGAAGTGAACAGATTGATGCTGTTCAGCTGGCTAAGCAGCTTAAAAAGAGATTTCTAAACCAGGTTATGACTGCAGGGCAGAAAGTCTTGTTTGAGTATCATGGAAATAATTATAGTTTTATGGTCAGTCAAGCTGTTGTTGAGGGCCATGAAAATTCTAATTCTCTTGAGAGAGGGATGCTATCGGATGACACATACGTTGTTTTTGAAACATCACGTGATAGTGGTATAAAGGTTGTCAATCAGCGTGAGGCTGCCACAAGCAACATTTTTAAGCAGAAGGAGTTTAATCTTGAGTCACTGGGTATTGGGGGTCTGAGTGCAGAGTTTGCAGATATATTCCGAAGAGCTTTTGCATCTCGTGTTTTCCCTCCCCATGTGACATCTAAATTAGGGATCAAGCATGTGAAGGGCATGCTGCTTTATGGGCCTCCTGGCACTGGAAAAACTCTTATGGCGCGCCAAATTGGAAAAATTTTGAATGGGAAGGAACCAAAGATTGTAAATGGCCCAGAAGTCTTGAGTAAATTTGTTGGTGAAACAGAAAAGAATGTGAGGGACCTCTTTGCTGATGCTGAACAAGATCAGAGGACCCGAGGGGATGAAAGTGATTTGCATGTCATAATTTTTGACGAGATTGATGCTATTTGTAAGTCAAGAGGTTCAACTCGAGATGGCACTGGAGTTCATGATAGTATTGTGAACCAACTTCTTACTAAGATCGATGGTGTGGAGTCACTAAATAATGTTTTGCTTATTGGAATGACCAACAGAAAGGACATGCTTGATGAAGCTCTTTTGAGACCAGGGCGACTAGAAGTCCAAGTTGAGATAAGCCTGCCTGATGAAAATGGCCGAATGCAGATTCTTCAAATTCATACTAACAAGATGAAGGAGAATTCCTTTCTAGCACCTGACGTGAACCTTCAAGAGCTTGCTGCTAGAACAAAAAACTATAGTGGTGCAGAACTTGAAGGTGTTGTGAAGAGTGCAGTGTCATATGCTTTAAATAGACAACTGAGTCTAGATGACCTCACCAAGCCAGTGGAGGAAGAGAATATCAAAGTTACAATGGATGACTTTTTGAATGCACTTCATGAAGTTGTTCCTGCCTTTGGAGCTTCAACTGATGACCTTGAAAGATGCAGACTTGGTGGCATGGTGGATTGTGGCGATCGAAATAAGCACATTTATCAAAGAGCTATGTTACTTGTGGAGCAAGTTAAAGTGAGTAAAGGAAGCCCAATTGTTACATGTCTTCTGGAAGGCCCAAGTGGCAGTGGTAAAACTGCACTTGCAGCTACTGTTGGCATTGACAGCGATTTCCCATATGTCAAGATTGTTTCAGCTGAATCAATGATTGGTCTACATGAAAGCACTAAATGTGCGCAGATTATCAAGACTTTTGAGGATGCATACAAGTCACCATTGAGTGTCATCATTCTTGATGACATTGAAAGATTACTGGAGTATGTGCCCATTGGTCCACGATTTTCAAATTTGATTTCTCAGACACTACTGGTACTGCTAAAACGTCTTCCTCCAAAGGGCAAAAAACTCCTGGTTATTGGTACGACAGGTGAATTGGGTTTCTTGGACTCAATTGGATTTTTTGATACTTTCTCCGTCACTTACCATGTTCCTACATTGAACGCAAATGATGCGAAGAAGGTTCTAAAACAGCTGAATGTCTTTGCTGAGGACGATATTGATGCCGCTGCAGAGGCCTTGAATGATATGCCTATCAAGAAGTTATATATGTTGATTGAGATGGCAGCCCAAGGGGAACATGGTGGATCTGCAGAAGCAGTCTATTCTGGCAAAGAAAAGATTAAGATCTCTCACTTCTATGATTGCCTCCAGGATGTCGTCCGATTATAA 2262 0.4244 MIVTNTPSQDLALTNLAFCSPSDLQNFAVPGSHRIFLALVGDSFVFSLAYPFRICRNFGHFCPIAFMNFLERSSVDSFFGHIALNSIQRRCARVSAAESVPVSRFLPPDNFNLAMLTLELDFIKRGSRSEQIDAVQLAKQLKKRFLNQVMTAGQKVLFEYHGNNYSFMVSQAVVEGHENSNSLERGMLSDDTYVVFETSRDSGIKVVNQREAATSNIFKQKEFNLESLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQRTRGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRMQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLDDLTKPVEEENIKVTMDDFLNALHEVVPAFGASTDDLERCRLGGMVDCGDRNKHIYQRAMLLVEQVKVSKGSPIVTCLLEGPSGSGKTALAATVGIDSDFPYVKIVSAESMIGLHESTKCAQIIKTFEDAYKSPLSVIILDDIERLLEYVPIGPRFSNLISQTLLVLLKRLPPKGKKLLVIGTTGELGFLDSIGFFDTFSVTYHVPTLNANDAKKVLKQLNVFAEDDIDAAAEALNDMPIKKLYMLIEMAAQGEHGGSAEAVYSGKEKIKISHFYDCLQDVVRL 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2376 753 Gene3D - 108 206 - -
Glsi11g2376 753 CDD RecA-like_NSF-SEC18_r1-like 229 405 - -
Glsi11g2376 753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 508 717 IPR027417 -
Glsi11g2376 753 SUPERFAMILY Cdc48 domain 2-like 108 211 IPR029067 -
Glsi11g2376 753 Pfam AAA+ lid domain 433 488 IPR041569 -
Glsi11g2376 753 Gene3D - 408 495 - -
Glsi11g2376 753 FunFam Vesicle-fusing ATPase 109 206 - -
Glsi11g2376 753 PANTHER VESICULAR-FUSION PROTEIN NSF 1 752 IPR039812 GO:0016887|GO:0035494
Glsi11g2376 753 FunFam vesicle-fusing ATPase isoform X1 504 675 - -
Glsi11g2376 753 Gene3D - 1 105 - -
Glsi11g2376 753 Pfam ATPase family associated with various cellular activities (AAA) 266 406 IPR003959 GO:0005524|GO:0016887
Glsi11g2376 753 Pfam ATPase family associated with various cellular activities (AAA) 547 659 IPR003959 GO:0005524|GO:0016887
Glsi11g2376 753 SUPERFAMILY ADC-like 1 49 IPR009010 -
Glsi11g2376 753 FunFam Vesicle-fusing ATPase 408 495 - -
Glsi11g2376 753 Pfam Cell division protein 48 (CDC48), domain 2 131 175 IPR004201 -
Glsi11g2376 753 FunFam Vesicular-fusion ATPase SEC18 218 408 - -
Glsi11g2376 753 ProSitePatterns AAA-protein family signature. 377 395 IPR003960 GO:0005524|GO:0016887
Glsi11g2376 753 Gene3D - 505 675 IPR027417 -
Glsi11g2376 753 Gene3D - 215 407 IPR027417 -
Glsi11g2376 753 SMART AAA_5 262 409 IPR003593 GO:0016887
Glsi11g2376 753 SMART AAA_5 542 678 IPR003593 GO:0016887
Glsi11g2376 753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 241 505 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2376 Glsi-ChrGlsi11 16666243 16676824 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2376 167 481 Calmodulin-binding Proteins AT3G56690 29.653 7.36e-30 125