Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2358 ATGAGGACACTTTCTGATGAATTGCTTCATGGTGCATTGATTGAACGGCGAACAAATCTTCCAGAATTGCATGAGAAACATACTGGCCGAAGCAATACTCCCAAGTCAGTCGTGGCTTCCTTCTTTTGTTTCCCTTTGTTGGGTATTCAGCTTTTTCCTCTCTTTTCTTGTTCTTGGTTTCTTGTCGAAGAGCTGTCGGGGTACCTTAGGCTAGCTTTTGTTGGTGATCATGGCCTCAAACTTCGACTATATTTGCATGATTATATGATCAAAAGGGGAATGGATAAGACTGCTGCAATTTTCCAAAAGGAAGCGGATATTTCTAACGCTCCCGTTGTGATTGAATCTCCAGAGGGATTCCTGCATGAATGGTGGTCTGTTTTTTATGAGGTATATTCCTCTAGGAATCTAAGCCATCAGGAGACTGGGCCAGAAGCCTCTAGTAAGGCCACACAAATGATCGATAATGAAAGAAAAAGCATCCCTCCTATAATCCCTCAACTAGCAGTGAGGGAGCAGAGACCTCAACAGTTTCAAATCGGCTCCAACATTAACAAGACGGTGGAGCAACCAGCTGCTTGTCTATTAACTTCGAAAGTGTATAATAAAGAACATCTTAGATATCTGGCCAAAGATTCTGATCCCAGTTTACATCATATCAATAAGAAGAAACTAAAATTCTTGGCAGGCACTAGTTCAAATCATCCACAACAAGATGTTGGCAAGCAGGTCCAGAATCAATTCTTTAGGGATAGTGGAATAGGCATTCGCCTAGGCAGCAATGTACAGATGGACCCCCTGGATGTAGTACAAAGAGCAGTTCGGCCTTCAGATAGGCCTCGTGAAACAATTTCGTCGAAGCATATGCGTAAGCTCATAGTTAATGTTAACTCATCTACTGACCATGGTCTCATGGGTCTGCAGAAGCAGTTACTCACTTCACTTTTGCAAGCACAAAACTATCAGCAGCAATTTCAGGTGCTTAAAACACAAAATCAGCAAGCACTCTTAGCTCAAGTGCTTTCATGTACACCTAAAATTCATACATCCATACTTCCTGGAAACTCTACAATATCGAACAATCAAGATCTGAAGATTCCCAAGACTGAATTAAGTAAGAAGGATAGGCAGCAGGGTGAGCTACAGCAGCTGCAGCCCCCAGATGTGGAGGACTTTAAAATTGCGGCAGATGATAGACCTGTGGATGAAAACATTGAGTCTTTCCTGTCTAATGAAAACGAAAATGCTGATCATAGAAGTGTGCCTTTTAGCAATCTGAAACGTGTTTCTACTACATCCGATACAAATGAAAATAAAGGTTTTTCATTTCAAGAAGTTGGTTGCCTTCACTCAAGCAAAAGCAAAGTTTTGTCTTGCCATTTTTCATCTGATGGAAAGGTTTTAGCAAGTGCTGGACATGAGAAGCAGGTTTTCATTTGGAACATGGAAACTTTTGATTATGCTACTACTTCAGAGGCACATTCACTTCTTATTACAGATGTTCGGTTTAAACCAGGTTCAACCATATTTGCAACATCTTCCTTTGATAGAACTGTAAAAGTATGGGATGCAGCCAGACCAAACAAATCATTGTTCAAGCTCCCTGGTCATGCTGAGCAAGTAATGTCATTGGACTTCCACCCAAGAAAGGCAGATCTTCTTTGCTCATGTGATAGCAATGATATAATTCGATTGTGGAATGTCAGTCAATGTGTTTGCATGCATATATCTAAGGGAGGTAGTAAACAAGTCAGGTTCCAGCCTCAATTTGGGAATTTTTTGGCTACTGCTACAGGAAATGATATCAATATAATTGATATCGAAACTGACAGCCTTCTGTATAACCTAAAGGGACATGTTAAAGATGTCCTTTCCATTTGTTGGGATGTTAGTGGAAACTATATCGCCTCTGTCAGTGAAGATGGTGCTCGTATGTGGTCTATTATGTCAGGTGGAAAATGCATACAAGAATTGCATTCGAATGGGAACAAGTTTCAGTCTTGCGTATTTCATCCTGGATATTTGAACCTCTTAATTATCGGTGGCTATCAGTCCCTGGAATTATGGATTCCAACTGAGAGCTGTAAAACATGGACTCTCCCTGCTCACAAGGGATTAATTGCTGGACTAGCTGACTCATTCCAAAATCAATTGATTGCCTCAGCTAGCCATGATCATTGCGTGAAATTATGGAAATGA 2199 0.4084 MRTLSDELLHGALIERRTNLPELHEKHTGRSNTPKSVVASFFCFPLLGIQLFPLFSCSWFLVEELSGYLRLAFVGDHGLKLRLYLHDYMIKRGMDKTAAIFQKEADISNAPVVIESPEGFLHEWWSVFYEVYSSRNLSHQETGPEASSKATQMIDNERKSIPPIIPQLAVREQRPQQFQIGSNINKTVEQPAACLLTSKVYNKEHLRYLAKDSDPSLHHINKKKLKFLAGTSSNHPQQDVGKQVQNQFFRDSGIGIRLGSNVQMDPLDVVQRAVRPSDRPRETISSKHMRKLIVNVNSSTDHGLMGLQKQLLTSLLQAQNYQQQFQVLKTQNQQALLAQVLSCTPKIHTSILPGNSTISNNQDLKIPKTELSKKDRQQGELQQLQPPDVEDFKIAADDRPVDENIESFLSNENENADHRSVPFSNLKRVSTTSDTNENKGFSFQEVGCLHSSKSKVLSCHFSSDGKVLASAGHEKQVFIWNMETFDYATTSEAHSLLITDVRFKPGSTIFATSSFDRTVKVWDAARPNKSLFKLPGHAEQVMSLDFHPRKADLLCSCDSNDIIRLWNVSQCVCMHISKGGSKQVRFQPQFGNFLATATGNDINIIDIETDSLLYNLKGHVKDVLSICWDVSGNYIASVSEDGARMWSIMSGGKCIQELHSNGNKFQSCVFHPGYLNLLIIGGYQSLELWIPTESCKTWTLPAHKGLIAGLADSFQNQLIASASHDHCVKLWK 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2358 732 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 534 569 - -
Glsi11g2358 732 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 700 732 - -
Glsi11g2358 732 CDD WD40 445 732 - -
Glsi11g2358 732 ProSiteProfiles Trp-Asp (WD) repeats profile. 534 569 IPR001680 GO:0005515
Glsi11g2358 732 ProSiteProfiles Trp-Asp (WD) repeats profile. 449 490 IPR001680 GO:0005515
Glsi11g2358 732 ProSiteProfiles LIS1 homology (LisH) motif profile. 77 109 IPR006594 GO:0005515
Glsi11g2358 732 SMART WD40_4 527 567 IPR001680 GO:0005515
Glsi11g2358 732 SMART WD40_4 693 732 IPR001680 GO:0005515
Glsi11g2358 732 SMART WD40_4 442 481 IPR001680 GO:0005515
Glsi11g2358 732 SMART WD40_4 609 647 IPR001680 GO:0005515
Glsi11g2358 732 SMART WD40_4 484 523 IPR001680 GO:0005515
Glsi11g2358 732 SMART WD40_4 651 690 IPR001680 GO:0005515
Glsi11g2358 732 SMART WD40_4 570 606 IPR001680 GO:0005515
Glsi11g2358 732 ProSitePatterns Trp-Asp (WD) repeats signature. 554 568 IPR019775 -
Glsi11g2358 732 Pfam WD domain, G-beta repeat 612 642 IPR001680 GO:0005515
Glsi11g2358 732 Pfam WD domain, G-beta repeat 697 732 IPR001680 GO:0005515
Glsi11g2358 732 Pfam WD domain, G-beta repeat 530 567 IPR001680 GO:0005515
Glsi11g2358 732 Pfam WD domain, G-beta repeat 492 523 IPR001680 GO:0005515
Glsi11g2358 732 Pfam WD domain, G-beta repeat 450 481 IPR001680 GO:0005515
Glsi11g2358 732 SUPERFAMILY WD40 repeat-like 442 732 IPR036322 GO:0005515
Glsi11g2358 732 ProSiteProfiles Trp-Asp (WD) repeats profile. 491 523 IPR001680 GO:0005515
Glsi11g2358 732 Gene3D - 580 732 IPR015943 GO:0005515
Glsi11g2358 732 ProSiteProfiles Trp-Asp (WD) repeats profile. 700 732 IPR001680 GO:0005515
Glsi11g2358 732 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 81 732 IPR044716 GO:0003714
Glsi11g2358 732 Gene3D - 307 579 IPR015943 GO:0005515
Glsi11g2358 732 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 491 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2358 Glsi-ChrGlsi11 16519698 16529052 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2358 436 731 Miscellaneous Gene Families AT5G08390 22.581 9.90e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Glsi11g2358 WD40 0.0043 CL0186