Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2357 ATGCTTAATGATGTTTCATTTGACCAACCCCTAGTCTATATATATGGCCCACTTTTGGCTTTCAAGTTTCCCTCCCAGAACCAGCCGCTTCCAAGTGAACCCCACCGGCCTCATGCCACCATGGCTACAAAGCTCAGAAATTTTCATCTCTCTTTCCTATCTGCCATTAACCCTTCTTCTATTTTCCCATCCTCAGCTAAATTCAGGCTTTATCTGGTGGCTGCTTTCCAGGCGCCTCAAGGCCTTCAAATACCAGTTACTTATGCACTTCCACTTCACTCAGCAACCCAAGCTCACTACTTGTTCTTTCAGATTTCTACATTACAGTCATTATCAAGTTTTATCTTTGCCTTATACATCGTTCTGAAAATGGACACCAACGCACCCACCACCACCACCACCACCACATCCACCACTTCCTCCTGGTCTAACGTAAATTACCTTGCGCAACAAAACATGGATTATCCTCAGAATGCCTATTTCCCGGTTTATGGTTATGGACCTCTAGCCTTTCCTGCAACTCCCTCACCCGCACCACCTACGCAATACTGTTATCCAGCACCTTACTTTGCACCATGTAATCAGAGTGTGCAATTCCCTTATATGAATTCGTTTCAGCAGGTAAATCATCCCATTGCTCATCCCATGGGCCAGAGCGTTGTTCAGTTTGGAATGCCAAACTGGCAACCTCGAGCTTTCTTCCATGATGAAGAGAGAAAGATGGAGGGAGCGTGGATGAGCAAGATTGCTAGGGACAAGAGAAAACAGGCGAGGCAAAGGAGCAGAAGTTCTACTTCTGGGGCTTCTGCTTCTGCTTCTGCAATCCCAGAAGAGCCAAGGGAAAAAGTCCCTAGCAGGGAAGAGGCAAATGTGCAGGAAAATGTCTCTGAAAGCATAATTTCCTGTACACTTTGCTCTCCAGATGGGAAGATGCTCAGAGGCATTTTGACAAAGAAATTAAAATCCTGCGACGTTGGCTCCCTAGGCCGCATTGTCCTCCCGAAGAGAGAGGCTGAGAAGAACCTTCCTGCGCTCCATAACAAGGAAGGAATCCAGGTTCTAGTGAAAGATGTATATTCTGACCAACAATGGAACCTGAAATTCAAGTACTGGACTAATAACAATAGCAGAATGTATGTTCTTGAAGATACAGGAAATTTAGTCAAGTACTATGAATTACAAGTTGGAGATTCTGTAACCTTTTACGAGGATGAACAAAAAAATCTGGTGAGCTTTACTTCATTATCAAGCAAGTTACTAAATATTAAAGTTGAGTTTCAAATATGGAAAACTGAAAAGCAATCTCTTCCTGTAGATAATAAGGACGAAGTTCTCTGCTTCTTTGATACTTATGTGTCTGTAGAAAAGGAGCAAAGGCCAGAAGTGGCAGAGCCTCCATCAACAAGCAGAGAAGGGCAGCAACCGCACGGCACATACAGCAGTAGCTACGTACATAGGCCTTATACGCACCAAGCTAAAGATGAAGAAGAAGAAGCATCTTTGGCTTTATTAATAGAAGAGCTTAGCCATAATGAGCAGGAAGCTGCTAACAGCCTTTTGAGCCTGTCAAATGATAAGCCTTACCTCAATACTGATCCAATAACCCAATTCCTCCAACAGTCTCTTCATTTCAGAGCCTCCATGGCTGCAGCTTCTGCAGCTCTCCATTCCCTTTACTCTCTGTCCCTTCACACCTCTTCGCGCTTCTCTATCCTCCCTACCACCAAATTTACCTTCTTTACCCACACCACAACCCCATTAAACTTTCTCTCTATCTCCTCATCTCCCATTATTTCTTTCAGCGCCATCAAAGCCAAATCCTCCGACATTGAAACCTCCTTCTTCGACAATGTGAGCCCAGAAGAAGACGTTGCTTTCAACCCCCCGGAAACCCCCGAAGGCTTCGTTTCCCCTCCGTCCTTTGATGAGGGTCCGATGGAAACCGAAGAAGAAATAGCTGCCGCATATGAGGAGCTCTATGGGCCTGGATACAGTGGTGTGAGTGTTCTGGGCAAGGATATATACGTAATGGACTCTAAGGTGAAGAAAGATACTGGGTTTGGTTCGAAAGCGAAGAAAGAGAAGGTTAGGGATGGATTTGAAGAAAGGGTAGTACAGGTGAGAAGGGTGACCAAAGTGGTGAAAGGAGGGAAGCAATTGCACTTCAGGGCAGTTGTGATTGTGGGTGACAAGAAAGGCCAAGTGGGTGTAGGAGTTGGGAAGGCTAAGGAGGTTATAGGCGCTGTTCAGAAGTCAGCTGTAAATGCAAGGCGGAATATCATCACAGTGCCTATGACTAAGTACCTTACTTTCCCACATAGATCTGAGGGAGATTATGGAGCAGCAAAGGTGATGCTTAGACCTGCATCTCCTGGTACCGGAGTTATTGCAGGTGGAGCTGTGAGAATTGTACTAGAAATGGCAGGCGTTGAGAATGCTTTGGGAAAGCAAATAGGGAGTAATAATGCCCTCAACAATGCCAGAGCAACAGTTGTAGCTGTGCAGAAAATGAAGCAGTTCCGCGAAGTTGCTCAGGAGCGCGGGATCCCAATGGAAGAACTATGGAAGTAA 2571 0.4539 MLNDVSFDQPLVYIYGPLLAFKFPSQNQPLPSEPHRPHATMATKLRNFHLSFLSAINPSSIFPSSAKFRLYLVAAFQAPQGLQIPVTYALPLHSATQAHYLFFQISTLQSLSSFIFALYIVLKMDTNAPTTTTTTTSTTSSWSNVNYLAQQNMDYPQNAYFPVYGYGPLAFPATPSPAPPTQYCYPAPYFAPCNQSVQFPYMNSFQQVNHPIAHPMGQSVVQFGMPNWQPRAFFHDEERKMEGAWMSKIARDKRKQARQRSRSSTSGASASASAIPEEPREKVPSREEANVQENVSESIISCTLCSPDGKMLRGILTKKLKSCDVGSLGRIVLPKREAEKNLPALHNKEGIQVLVKDVYSDQQWNLKFKYWTNNNSRMYVLEDTGNLVKYYELQVGDSVTFYEDEQKNLVSFTSLSSKLLNIKVEFQIWKTEKQSLPVDNKDEVLCFFDTYVSVEKEQRPEVAEPPSTSREGQQPHGTYSSSYVHRPYTHQAKDEEEEASLALLIEELSHNEQEAANSLLSLSNDKPYLNTDPITQFLQQSLHFRASMAAASAALHSLYSLSLHTSSRFSILPTTKFTFFTHTTTPLNFLSISSSPIISFSAIKAKSSDIETSFFDNVSPEEDVAFNPPETPEGFVSPPSFDEGPMETEEEIAAAYEELYGPGYSGVSVLGKDIYVMDSKVKKDTGFGSKAKKEKVRDGFEERVVQVRRVTKVVKGGKQLHFRAVVIVGDKKGQVGVGVGKAKEVIGAVQKSAVNARRNIITVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQIGSNNALNNARATVVAVQKMKQFREVAQERGIPMEELWK 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2357 856 MobiDBLite consensus disorder prediction 467 483 - -
Glsi11g2357 856 Gene3D - 696 761 - -
Glsi11g2357 856 Gene3D - 306 418 IPR015300 -
Glsi11g2357 856 Gene3D - 767 855 IPR014721 -
Glsi11g2357 856 FunFam 30S ribosomal protein S5 765 856 - -
Glsi11g2357 856 Hamap 30S ribosomal protein S5 [rpsE]. 677 853 IPR005712 GO:0003735|GO:0006412|GO:0015935
Glsi11g2357 856 SUPERFAMILY dsRNA-binding domain-like 696 765 - -
Glsi11g2357 856 SMART B3_2 316 416 IPR003340 GO:0003677
Glsi11g2357 856 ProSitePatterns Ribosomal protein S5 signature. 717 749 IPR018192 -
Glsi11g2357 856 Pfam Ribosomal protein S5, N-terminal domain 700 764 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Glsi11g2357 856 MobiDBLite consensus disorder prediction 457 483 - -
Glsi11g2357 856 MobiDBLite consensus disorder prediction 247 292 - -
Glsi11g2357 856 ProSiteProfiles S5 double stranded RNA-binding domain profile. 700 763 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Glsi11g2357 856 Pfam B3 DNA binding domain 318 409 IPR003340 GO:0003677
Glsi11g2357 856 ProSiteProfiles B3 DNA-binding domain profile. 316 418 IPR003340 GO:0003677
Glsi11g2357 856 PANTHER RIBOSOMAL S SUBUNIT 689 855 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Glsi11g2357 856 CDD B3_DNA 315 405 IPR003340 GO:0003677
Glsi11g2357 856 Pfam Ribosomal protein S5, C-terminal domain 777 847 IPR005324 GO:0003735|GO:0005840|GO:0006412
Glsi11g2357 856 NCBIfam 30S ribosomal protein S5 699 853 IPR005712 GO:0003735|GO:0006412|GO:0015935
Glsi11g2357 856 SUPERFAMILY Ribosomal protein S5 domain 2-like 770 848 IPR020568 -
Glsi11g2357 856 SUPERFAMILY DNA-binding pseudobarrel domain 316 409 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2357 Glsi-ChrGlsi11 16511901 16518782 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2357 228 409 B3 DNA Binding Superfamily AT1G28300 46.703 1.67e-36 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Glsi11g2357 B3 3e-11 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g2357 11 16511901 16518782 Glsi11g2357 11 16511901 16518782 ECH