Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2354 ATGCAGCAGCAGCAGCAAGAAGATGATGGAAGAGGAGGAGATCGGAGGTTGAAGGCGACGCAAGCAGAATGGAAGGCTCAGATTCAACCTCCGCCAACCCAGAAATGCCCTCGCTGTGAATCACTCAACACCAAGTTCTGTTACTACAACAACTATAGCTTCTCGCAGCCTCGTTACTTCTGCAAAAACTGTAGAAGGTACTGGACCCAAGGCGGAACCTTGAGGAACGTCCGCGCTGGCTGTGGGGTTCGTAAGGGCAAACGCGTAACCACCAAAAACTCTTCGTCTTCCTGCCAAGAACCACCACCGCAAAAGGTCGTCCAAATGGAGCCTAATTTGACGGCGCCCGTAATAACGGTTTCGTCAAATGAAGACTCTTCAACCGTGGGTTCTCCTTCTCCGGCGGTTTCAATCAGTCCCTTCTATCAAGGTGGTGGTGGGTTTCTGGCTTCCCTGGCGGCGATTCATTCTCTGAACCCATCTCAGCCGTTCGATCAATCTCTGGATGTTGGAGGTGACGGGGTGGGTGGGTCTAGTCTGGGTATTCTTTCTGGGTTCATGGGTTCTTCTCTTTGCTCACAAAACCACCAGCAGGATCAGAGCCAAATCAGCTCATCACAATTTTATCAAATGGGTATGAGAGATGATCAAGCTTTAATTCAATCAACCATGGCTAATAGCACTATTTCCGCTTCTCGCCATGATTGGCCTCGGAGCTTCATGAATAATGCTAACCATATGGCCTCTGATGCCTCCTTGTGGAGCACTGTAAGCACTACTTCCACTGGTGGAAACTCTGAGAGTGCTGCTATTGGTGGGTCATTTTCTTTGATCCCAAATGATCAGTGGCCTGATCTTCCGGGGTATGACCCTCCTCCATGA 882 0.4989 MQQQQQEDDGRGGDRRLKATQAEWKAQIQPPPTQKCPRCESLNTKFCYYNNYSFSQPRYFCKNCRRYWTQGGTLRNVRAGCGVRKGKRVTTKNSSSSCQEPPPQKVVQMEPNLTAPVITVSSNEDSSTVGSPSPAVSISPFYQGGGGFLASLAAIHSLNPSQPFDQSLDVGGDGVGGSSLGILSGFMGSSLCSQNHQQDQSQISSSQFYQMGMRDDQALIQSTMANSTISASRHDWPRSFMNNANHMASDASLWSTVSTTSTGGNSESAAIGGSFSLIPNDQWPDLPGYDPPP 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2354 293 MobiDBLite consensus disorder prediction 256 293 - -
Glsi11g2354 293 Pfam Dof domain, zinc finger 33 88 IPR003851 GO:0003677|GO:0006355
Glsi11g2354 293 ProSitePatterns Zinc finger Dof-type signature. 36 72 IPR003851 GO:0003677|GO:0006355
Glsi11g2354 293 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 21 225 IPR045174 GO:0003700|GO:0006355
Glsi11g2354 293 MobiDBLite consensus disorder prediction 256 275 - -
Glsi11g2354 293 ProSiteProfiles Zinc finger Dof-type profile. 34 88 IPR003851 GO:0003677|GO:0006355
Glsi11g2354 293 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2354 Glsi-ChrGlsi11 16491859 16492740 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2354 14 101 C2C2-Dof Transcription Factor Family AT5G60850 62.222 5.22e-30 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Glsi11g2354 zf-Dof 9e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g2354 11 16491859 16492740 Glsi11g2354 11 16491859 16492740 CCT
Glsi11g2354 11 16491859 16492740 Glsi11g2354 11 16491859 16492740 ECH