Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2349 ATGCCAGCACAGAAGCGCTTGCACGAGGCTTCAGAAGAGGATGCGCTGCACGGCGGGAAAAACCAGTGTGAGCAGCTAGAAGATGAATTGGATTCCGATCGAAGCCATTCGTCGAGCACCGGGGACAAAGAAGAGTATGTTGTTATAAAGTTGTCAGATGTACGCAAGGAAGTTCAATGTCCTATCTGCTTAGGCATCATTCGAAAAACAAGAACTGTAATGGAATGCCTGCATCGCTTTTGCAGAGAATGCATAGACAAATCCATGCGCCTTGGCAACAATGAATGCCCTGCTTGCCGCACACATTGTGCTAGCCGACGCTCACTGAGAGATGACCCAAACTATGATGCTTTAATTTCTGCTCTCTATCCAGATATAGACAAGTATGAGGAACAGGAATTGGCTTTACATGAAGATGAGAAAGCTCGCAATAAGCAGATCCAAGCTTCTATTGCTCAGACTCTTCGACGACAAGCAGAAGCACTGGGTAAGAAACGTAATGCCAAAGACACAGTGGCGGCTTTGGTGAGGAGGTCACAAGGTAACTATCGAACTGCACATATGAGGGTAAGAAGAAATTGTAGAAGCGCAATTGAACTTCAAGGATCTTATGACACTGAGGATATGAATGATAATGGTGGGGGTAAGGATTTGTCTTCTGGCGATGAGTTGACAGAAATCAAGCCAAAAAGATGCAAGAGAAGGGGAGAATCACAGTTTCCTCTGCATTCTGCCACTACTGTTGCAGATGGAGGTGGTGATGACAATTTTCTTGACGTGAGTAGAGAAATCATATGTCCATCTGGTGCACTTGCCTGGGGAAAAAATGGCCACAGGAGTCACACCAGAGTCAATGGTAAGAATGCCAGAAACAGTCGCCTCTCCAAATTGGTTGATCATCTGCATAGTTTGGAGGAAAATGATGATAAGCTGGGTGTCCGTCTCATGCTTGTATCTTTGGATGAGCAAAGAATACCAAGTTTGCAGCAGCCATACCTTTGCTGCAGGCCTACATTGTCTGTCAGGCACCTATGCCAGTTTGTTGCGCTTCAGACTGCTCGGCTGGCTGATGAAGTTGAGTTATGCCTGGTAACAGAGCAGCAACCCAACGTTATAAGAGCTGCAGGCCCAGTAGATCCATCCCAAGATAAGTTGCGAGTTTTGGGAGAGCAAGAAACTTTGGCTGAACTCAAAGCTGATAATTTTAGCTGTGGCCATCTGCTTATGGCATATAAGAGGAAGTTGGGGAACACAACCATGGTTGGCTTGAGATGA 1275 0.4596 MPAQKRLHEASEEDALHGGKNQCEQLEDELDSDRSHSSSTGDKEEYVVIKLSDVRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDIDKYEEQELALHEDEKARNKQIQASIAQTLRRQAEALGKKRNAKDTVAALVRRSQGNYRTAHMRVRRNCRSAIELQGSYDTEDMNDNGGGKDLSSGDELTEIKPKRCKRRGESQFPLHSATTVADGGGDDNFLDVSREIICPSGALAWGKNGHRSHTRVNGKNARNSRLSKLVDHLHSLEENDDKLGVRLMLVSLDEQRIPSLQQPYLCCRPTLSVRHLCQFVALQTARLADEVELCLVTEQQPNVIRAAGPVDPSQDKLRVLGEQETLAELKADNFSCGHLLMAYKRKLGNTTMVGLR 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2349 424 SUPERFAMILY RING/U-box 45 131 - -
Glsi11g2349 424 MobiDBLite consensus disorder prediction 1 42 - -
Glsi11g2349 424 ProSiteProfiles Zinc finger RING-type profile. 60 100 IPR001841 -
Glsi11g2349 424 ProSitePatterns Zinc finger RING-type signature. 76 85 IPR017907 -
Glsi11g2349 424 CDD RING-HC_RING1-like 57 122 - -
Glsi11g2349 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 130 IPR013083 -
Glsi11g2349 424 MobiDBLite consensus disorder prediction 205 226 - -
Glsi11g2349 424 Pfam Zinc finger, C3HC4 type (RING finger) 59 99 - -
Glsi11g2349 424 SMART ring_2 60 99 IPR001841 -
Glsi11g2349 424 PANTHER OS11G0578200 PROTEIN 13 414 IPR044592 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2349 Glsi-ChrGlsi11 16445008 16449293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2349 53 123 C3H Transcription Factor Family AT3G23060 33.784 4.04e-06 47.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g2349 11 16445008 16449293 Glsi11g2349 11 16445008 16449293 CCT