Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2346 ATGTCACTCGCAGAATCTCCGGTCGTTGCCGACGAGGACAGCGACCCATCGATTGAAACCTATTGTTCCGACGCTGTTGCCAGTGATTCAGAAGAACCCGGTGAAGAAGAAGAAGTAGAAGAAGAAGAAGAAGAAGGAGAAGGTGAAGAACATGAAGAAGAAGTGGAAGTAGAGGAAGAAATAGAAGAAGAGGAAGTAGAGCCGGAGGACGAGATGAAGGGCAAATGGGAGGTATCAGAACCTCCAGTAGGTGCCGATAAGGATCCTAAAGGTGACCTTTCGGGGTGGTTATCTGTGTTCTGTTGTTCTCTTGGATCTTTTGGTGTAGGAGATTTAATCCAATATGTGAAATCTGAGGGGCTAGAGAGGAATGCGATGCCAGTTTCTTCTGTGGCAGAAAACTCTAATATAATTTCTGTGGAAAAGAATGACTCATGTAAGATTCTTACAACGAAAAAGGAAGATTTTTGTCTGAAACATGAAACTTCAAGTGGTCCAAATTTGAGAAATATTGTGGCTACTGCTGAAGATGATAAACATCAAGGATTAGATGTTGATATGGAAAATAATGTATCCCCTCTTCAAAGTAAAACCTTTGGTGAATACAATGAACAGAGTTGTAATAGCAAAGCTTACTTATGTGGTGTTAATGATATGGATTCTGGGACTGCCAAGTCATCCAGGGATGCTGGAAAAGATCTGGCTATTGACTTCCTGCAGAGAGACTTTGTGGAGGATGATAATGGTGGTCAGAGTTCTATGACCCGAATTAAGCAGTTGGAGATGCAGACAGGGGATGATATGAAGCAAATGACATCAAGATTTACTTCTCCTGATATGAGGACTAGAAATCTGTCTCCCAGTACTGAGATGAAAGATGGAAACAAAAGACCAGCAATTATATGCAACTTTTTTGCTAAAGGATGGTGCATCAGGGGTAGTTCATGTAGGTTTCTTCATATAAAAGATCATGTGAATACAACTGTTCAGCAGGCCGAAGGAGACTTAGTTACTACAAATAGGAAGAGAGAAGTGCAATTGGAGGAAGGTCTAGGAGACAATGCTGAGACATCAAGGACGCCTGGTACTCCTGTTCCATTGGCTGCTTCAATGGTTAGAACATCTTTGTATTCTTCTGAAGTTTCAATAAAAGAGACCATTCAGGATGAGCACAAAGCAAGCCCAAGTCGGCATCCATCTCAAGATAAACAAAAGTTTTCATTGCTTCCAAAAGAGGACTTATCTTTTAAGAATCATGCCTTACCAATTGGTAGAGATAGTTCTGAATCCAGGGACAGTTTGTTTCCTGAAAAAAGATTGATGTTTAATGTATCAAGCAACTATGTCAGCATGAGTCTCTCTTCCTATCCACCCTGTGCTGAGGGATTGGCTACCGTTCAAAGCCAACATATGTACAACAAATATACTTCCCCATTTATGAGTCATTCACTTAATTCAAGCTTGGTTACTCACCTTCCTACTATGGGCACGTCAAAGTCCCACCAAATTTCAGCCCAATCAGGTTATTCGTTGTCTCTTAATTCATCTATTGGTGCAAGTACTTTGGATGCTCAAAAGCTGTTGAACAGTGACAATGAATATCATTCCCCTAGGTCCACTTTCTTTGGTTCAGAACAGGAAGATTTGCCTCTAATTAGTTCATCTGGCGTTCCACCATGTGCCACTAGATATAACTCAAAAATCTCTTGTTATGATTGGGAGCCTTCTGTACCTTTTCGACCATCATTTTTTATTACTTCAACCACTATATCATCCCCAGGAGATCAGTATGATCCTCTTTGTCCTACTGTTGACATACCCAATATAGGAGATGGATCTTTGAAAGCTTCCTATTTTATTCAAGGGCCTTCCACCCAGGCTTCATCTCAGGTGCGGACATATGGTCAGTATGCTGTAGGTGGGGACAAGGTGGCAGATCTTAATGATGACAAAAGTTCTCTATCTTCTCATAATAGATTTTATGAGAATGAACCAAACAAGAGTTGTGTTCCATGTGAAAAAGATGGTCTTGTACCTGAAACAGAGACAACAGGCAGAACCTATCTAAACTCCCAAAATGTTAAAACAGGTGTCAGAGAAAATACCTTTGGTGTTGAAGACATTACAAAAACAGAAAAAGAACAAACTGAGCATGATGCAAGACATCAAGGTGAAGGTTCGAGGCACAAAAAGAAAAGAGTGGCTAGGGCTAAGAAAAACAATGAAATGGATGTTGACTTCCAGATAGATAGTGATTTGCAGAATGATTTGAAGGCTCTAAAAAATTTTCGTGCAGCTCTTGTCGATTTAGTGAAAGAGTTGTTAAAACCAAAATGGCAGGAGGGTCGTCTCAGCAAGGATGCACATAATACAATAGTTAAGAAATCAGTTGACAAGGTTGTTAGCACCTTACAGCCCCATCAGATTCCAACCGCCACAGATATGATTAAGCACTATGTTTCTTCGTCTCGGTTGAAAATTGCGAAGCTCGTTGATGGATATGTCAATAAATATGGCAAGTCTTGA 2526 0.4046 MSLAESPVVADEDSDPSIETYCSDAVASDSEEPGEEEEVEEEEEEGEGEEHEEEVEVEEEIEEEEVEPEDEMKGKWEVSEPPVGADKDPKGDLSGWLSVFCCSLGSFGVGDLIQYVKSEGLERNAMPVSSVAENSNIISVEKNDSCKILTTKKEDFCLKHETSSGPNLRNIVATAEDDKHQGLDVDMENNVSPLQSKTFGEYNEQSCNSKAYLCGVNDMDSGTAKSSRDAGKDLAIDFLQRDFVEDDNGGQSSMTRIKQLEMQTGDDMKQMTSRFTSPDMRTRNLSPSTEMKDGNKRPAIICNFFAKGWCIRGSSCRFLHIKDHVNTTVQQAEGDLVTTNRKREVQLEEGLGDNAETSRTPGTPVPLAASMVRTSLYSSEVSIKETIQDEHKASPSRHPSQDKQKFSLLPKEDLSFKNHALPIGRDSSESRDSLFPEKRLMFNVSSNYVSMSLSSYPPCAEGLATVQSQHMYNKYTSPFMSHSLNSSLVTHLPTMGTSKSHQISAQSGYSLSLNSSIGASTLDAQKLLNSDNEYHSPRSTFFGSEQEDLPLISSSGVPPCATRYNSKISCYDWEPSVPFRPSFFITSTTISSPGDQYDPLCPTVDIPNIGDGSLKASYFIQGPSTQASSQVRTYGQYAVGGDKVADLNDDKSSLSSHNRFYENEPNKSCVPCEKDGLVPETETTGRTYLNSQNVKTGVRENTFGVEDITKTEKEQTEHDARHQGEGSRHKKKRVARAKKNNEMDVDFQIDSDLQNDLKALKNFRAALVDLVKELLKPKWQEGRLSKDAHNTIVKKSVDKVVSTLQPHQIPTATDMIKHYVSSSRLKIAKLVDGYVNKYGKS 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2346 841 ProSiteProfiles Zinc finger C3H1-type profile. 296 323 IPR000571 GO:0046872
Glsi11g2346 841 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 32 840 - -
Glsi11g2346 841 Gene3D - 288 346 - -
Glsi11g2346 841 MobiDBLite consensus disorder prediction 266 292 - -
Glsi11g2346 841 SUPERFAMILY CCCH zinc finger 296 320 IPR036855 GO:0046872
Glsi11g2346 841 Coils Coil 41 61 - -
Glsi11g2346 841 MobiDBLite consensus disorder prediction 29 70 - -
Glsi11g2346 841 MobiDBLite consensus disorder prediction 386 409 - -
Glsi11g2346 841 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 301 320 IPR000571 GO:0046872
Glsi11g2346 841 MobiDBLite consensus disorder prediction 71 87 - -
Glsi11g2346 841 SMART c3hfinal6 296 322 IPR000571 GO:0046872
Glsi11g2346 841 MobiDBLite consensus disorder prediction 266 291 - -
Glsi11g2346 841 MobiDBLite consensus disorder prediction 711 739 - -
Glsi11g2346 841 MobiDBLite consensus disorder prediction 1 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2346 Glsi-ChrGlsi11 16432080 16436153 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi11g2346 zf-CCCH 7.9e-06 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g2346 11 16432080 16436153 Glsi11g2346 11 16432080 16436153 ECH