Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2343 ATGGCTTCTTCGTCATCTCCTACTTCTTCTGCATCGCGCGAAGGCCACTACAGAGGGGTGAGAAAGCGACCATGGGGTCGATACGCAGCCGAGATACGCGACCCCTGGAAGAAAACCCGCGTTTGGTTGGGTACATTCGACACACCAGAAGAAGCTGCACTTGCCTACGACGGTGCCGCCCGTACCCTCCGCGGACCCAAAGCCAAGACTAACTTCCCTACAGCGCCGGTCGCCGCCGGAGGCCTTTGCCTTGACCTCAACATCCCCACCTCAGACCATCGCTGGCCTCCCATCCCCTCTGGTCATCTCGTACTCGGTGAGCTCTTCCACGCTGGGATTCTCAAGGATATGAACTTTGTAGATCCTCAGCCTTCGCCTCCGTCTGCTGTCGCGTCCATCGCGGTGGTTCACAACAGTGGCGATGATTCTGCGGGCGGGGGCGGTGGTTCCCAGATGCCAGAGAACTCTCGTACGGCGTCATTTCTGGGTCTTGTTCCGCGCGGGTTGCCTATTGACTTGAACGAACCTCCTCCGTTGTGGCTATGA 546 0.5861 MASSSSPTSSASREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARTLRGPKAKTNFPTAPVAAGGLCLDLNIPTSDHRWPPIPSGHLVLGELFHAGILKDMNFVDPQPSPPSAVASIAVVHNSGDDSAGGGGGSQMPENSRTASFLGLVPRGLPIDLNEPPPLWL 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2343 181 CDD AP2 16 75 IPR001471 GO:0003700|GO:0006355
Glsi11g2343 181 Gene3D AP2/ERF domain 16 75 IPR036955 GO:0003700|GO:0006355
Glsi11g2343 181 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Glsi11g2343 181 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Glsi11g2343 181 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Glsi11g2343 181 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Glsi11g2343 181 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 8 123 - -
Glsi11g2343 181 FunFam Ethylene-responsive transcription factor 2 16 74 - -
Glsi11g2343 181 Pfam AP2 domain 16 65 IPR001471 GO:0003700|GO:0006355
Glsi11g2343 181 SUPERFAMILY DNA-binding domain 16 74 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2343 Glsi-ChrGlsi11 16403279 16403824 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2343 8 181 AP2-EREBP Transcription Factor Family AT1G28360 44.898 5.11e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi11g2343 AP2 1.6e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g2343 11 16403279 16403824 Glsi11g2343 11 16403279 16403824 ECH