Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2340 ATGGCGCCGAGGGAAAAGACGACTGCCGTAAAATCCAACGGTGAAAGCGGCGTCAAGGAGATGCATTTTCGGGGAGTCAGAAAGAGACCGTGGGGGAGGTACGCCGCCGAGATAAGAGATCCCGGCAAGAAGAGCCGCGTTTGGCTCGGGACCTTTGATACGGCCGAAGAGGCGGCTCGAGCCTACGACGCAGCTGCCAGGGAGTTCCGGGGGGCCAAGGCCAAAACCAACTTCCCTCCCCCTTCTGAGAATGTGAGCCACCAGAGTCCGACTCAGAGCAGTACGGTCGAGTCTTCAAGCCGTGACCGGGAGCCGGCTGTTATGGTTGTTTCCTCGCCGTTGGACCTCAACTTGTCCCACCCCGGAGGATCCGTCACCAGCACCGTTAAATTCCCGTTCCAGCCGCAGCAGTTTCCTCCGCATAGCGCTGTTTTTCCCGGGGCACTGCCGGCGGTGAACCAGGTGTTCTACTTGGACGCAGTCCTACGCGCGAGCATGGCGGCGGGTCATTCATTCCCAGGCTTCGTGTTGGATCACCATCGTACGGAGGCGAGTGAGTTTCGCGGTGGTGGTGTCCAAAGCGACTCCGATTCATCGACGGTGATCGATCTGAACTCACATGATGAGAAACCTGCTCGAAAGGAGTTGCATCTCGATCTTAACAGGCCTCCTCCAGAGGAGATGGCATGA 690 0.5855 MAPREKTTAVKSNGESGVKEMHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPPPSENVSHQSPTQSSTVESSSRDREPAVMVVSSPLDLNLSHPGGSVTSTVKFPFQPQQFPPHSAVFPGALPAVNQVFYLDAVLRASMAAGHSFPGFVLDHHRTEASEFRGGGVQSDSDSSTVIDLNSHDEKPARKELHLDLNRPPPEEMA 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2340 229 SUPERFAMILY DNA-binding domain 22 79 IPR016177 GO:0003677
Glsi11g2340 229 MobiDBLite consensus disorder prediction 72 105 - -
Glsi11g2340 229 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Glsi11g2340 229 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Glsi11g2340 229 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Glsi11g2340 229 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 162 - -
Glsi11g2340 229 MobiDBLite consensus disorder prediction 202 229 - -
Glsi11g2340 229 MobiDBLite consensus disorder prediction 1 24 - -
Glsi11g2340 229 MobiDBLite consensus disorder prediction 79 101 - -
Glsi11g2340 229 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Glsi11g2340 229 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Glsi11g2340 229 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Glsi11g2340 229 FunFam Ethylene-responsive transcription factor 2 21 80 - -
Glsi11g2340 229 MobiDBLite consensus disorder prediction 186 229 - -
Glsi11g2340 229 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2340 Glsi-ChrGlsi11 16390150 16390839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2340 1 105 AP2-EREBP Transcription Factor Family AT5G44210 58.871 2.12e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi11g2340 AP2 3.3e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g2340 11 16390150 16390839 Glsi11g2340 11 16390150 16390839 ECH
Glsi14g1026 14 11394754 11395383 Glsi11g2340 11 16390150 16390839 ECH