Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2322 ATGATTCCCACAGGACCTCCTTGGGGAAGTTCCGATCTTGATCGGGTTTCTTCAATGGAGGCTGAGGCTGCTTCAGAGGGAGAGAATAATCAGAAGAGGGACGCCACTGACGATTACAATGATCATAATAATGGAAGTAGCAGCAAAATTGCTAATTCCAATGAGGGCCAGAGCAAGCCCAAGCGCCAGATGAAAACCCCCTTTCAGCTTGAAGCCTTGGAGAAAGCTTATGCTTTGGAGACGTATCCATCGGAGGCGATGAGGGCGGAACTGTCGGAGAAATTGGGGTTGTCCGATCGGCAATTGCAGATGTGGTTCTGCCATAGGAGGTTGAAAGACAAGAAGGAGTTGCCGCCAAAGAAGTCGCGGAAGACGGTGGCTCCTTTGCCTGATTCGCCGACAGACGAGCTAAGAATGGGGCCTGAACTTGGTAATGATTACGGATCCGGGTCGGGTTCGGGCTCAAGCCCGTTCTCTCGTTCAGAGTTGCGGAACGTAGTACCTCGGGGTGTGCCGGGGTACTATGAGTCGCAGCAGTCTATAATAGAGCTTAGAGCAATTGCTTGTGTCGAGGCACAGTTAGGGGAGCCGTTGAGGGACGACGGACCCATTTTAGGAGTTGAGTTTGATCCCTTGCCACCGGATGCATTTGGGGCACCTATAGCAGTTACAGAGCAGCAGAAACGCCCTAATCTTGGCTTTGATGGTAAAGTTTATGAAAGACATGATGTTAGATCAAATAAGACTATGGCAAGGGCTTTCCATGAATATCCATTTCTCTCAAACCAGTCCAGTATTAGATCTGATGCATATGGACAATTGACCCAACCTCATTTACATGATCCAATGGATAATCCTAGCAGAACTCCATCTTTTGTGCTTGGAAATGAACAGCTACCCAGGATTCATGCTGCCCAAGGTCATTCTTCACGTGTTCGTCTTTTGTCTCAACAAGAGAAGCAAGGGATTTCCTATCAATCAACTCAGGATGATGATGGTGCCCCCCAAAGGGAATCTTACTCAAACATAAACATTGGAATTAACTCTCATTTCACTGATCGCCCAATTGTTGGATCAGAAAATCCTTATGCTTTACCTGGTGTACAAGTTTTCCAGAGCGATCCGATATTGCGGATGGAGAGGAAACGGAAGAGTGATGATTCTAGAACTGCAAGAGAAGTTGAAGCCCATGAGATGAGGATTCGGAAAGAGCTTGAGAAACAAGATAACCTTAGGCGAAAGAGTGAAGAACGAATGAAGAAAGAAATGGAGAGGCAAGATCGTGAAAGAAAGAAGGAGGAAGAGAGGTTGATGCGTGAGAGACAGCGAGAAGAAGAAAGAACAAAGCGTGAACAAAGACGTGAAATTGAACGAAGGGAAAAGTTTTTGATGAAAGAAAACTTAAGAGCTGAGAAAAAGAGGCAAAAAGAAGAGCTTCGCAAAGAGAAAGAAGCAGAGAGAAGGAAAGCTGCCCTTGAGAAGGCAACTGCTCGCAGAATAGCTAAAGAATCTATGGAACTTATTGAGGATGAACAACTGGAATTGATGGAGTTGGCTGCAGCAAGCAAGGGACTTTCCTCAATTATACATCTTGATCTTGACACTTTGCAAAACCTTGATACATTCCGGGTTTCATTGAGTGTTTTTCCTCCTAAAAGTGTGAAGCTGAAAAGACCATTTGCTATTAAACCCTGGATGAACTCAGAGGAGAATGTTGGCAATGTTCTCATGGTTTGGAGATTTTTGATTACTTTTGCAGATGTGCTTGAGTTATGGCCTTTTACCCTTGATGAATTTCTGCAGGCATTTCATGACTATGATTCTAGATTGTTGGGTGAGATACATGTTGCTCTTCTGAAGTTGATAATAAAAGACATTGAAGATGTTGCAAGGACACCTTCTGCAGGATTAGGTATGAACCAGAACGGTGCTGCTAATCCCGGGGGTGGCCATCCAGAGATTGTGGAAGGGGCATATGCATGGGGCTTTGACATTCGAAATTGGCAGAAGCACTTGAATCAATTGACCTGGCCAGAAATTTTCCGACAGCTAGCACTGGCTGCAGGATTTGGACCACAGCTGAAGAAAAGAAGTATGACATGGTCATATGCAAATGATAAAGATGAGGATAGAAGTTGTGAAGATATTATTTCCACACTTCGCAATGGTTCAGCAGCTGAAAATGCAGTGGCAAAAATGCAAGAGAAAGGTCTATTAGCCCCTCGAAGATCTAGGCATCGTTTGACACCTGGAACAGTCAAGTTTGCAGCATTTCATGTTCTGTCGCTTGAGGGTAGCAAGGGGTTGACGGTACTAGAGCTTGCAGAGAAAATTCAGAAATCTGGACTTCGGGACCTGACGACCAGCAAGACACCTGAGGCATCTATTTCTGTTGCTTTGACTAGAGATGCTAAGCTTTTTGAAAGAATAGCTCCATCAACATATCGTGTACGAGCTGCATATAGAAAGGATCCTGCTGATGCTGAGGCCATTCTTTCAGAAGCTAGAAAGAAAATTCAGATATTTGAAAATGGGTTTTTGGCTGTTGAAGATGCTGACGATGTTGAAAGAGAAGAAGAGTCGGAAAGTGATGAAGTTGATGAGGATCCTGAAGTTGATGATTTAGTAAATCTGTCTAGTGCTAGTAAAACCTTGGAACAGTATGATGACATGAACAATTGCTCAACAAATGGAAAAGAAAATTTGATCCATGATGAAGAACTTATTCAAAATGAGTTTGATAAGGATCTGCCCTGTTTTTCTGAGAATGGTTCCAAGGATGCTGATTGTCCTAGTGCTGTCACAGGACAACCTGTTGCTGTTGAAGATCTTAATGCTGGAAATCTTGATGAAGATAATATGGAAATTGATGAAAGCAAGTCTGGAGAGTCATGGGTTCAAGGGCTTACAGAAGGAGAATATTCTGATCTCAGTGTAGAGGAGCGTCTTAATGCTCTTGTTGCATTGGTTGGTGTGGCAAATGAAGGAAATTCAATACGTGTTGTTCTTGAGGATCGACTGGAAGCAGCAAATGCTTTGAAGAAGCAAATGTGGGCAGAAGCACAGATAGATAAAATTCGGCAGAAAGATGATACTAATAATAAATCAGATTTTCCATCTCTTAATAAAGTTGAAACACAATACACAGGTCCTGCTGTGGAGGGAAACCAGAGCCCAATGCTTGACATTAATATTAATAATAATGAAGCTTCACCCAGCACTGCTGAAAACCAAAAAGTAGTTCTTGGGGCACAGAGCACGCCTCTTGAAAAGCCCTCAGTTGTTCAAGATCTCTTTGCAGGTCCAGATAACCTTCAGACTCTATCTGCCCATGCTTCGAAAAGGTCTCGTTCACAGTTGAAGTCTTATATTGCACATATAGCAGAAGAGATGTATGTATACAGGTCCTTGCCCCTTGGTCATGATCGGAGACGTAATCGATATTGGCAATTTGTTGCATCTACTTCTAGCAATGATCCAGGTTCTGGCAGGATCTTCGTCGAATTACATGATGGCAATTGGAAGCTTATTGATTCTGAAGAGGCCTTTGATGCACTGTTGACATCACTTGATACTCGTGGGATCAGGGAATCTCATTTGCGCTTAATGTTGCAAAAGATTGAGAATTCCTTTAGAGAAAATGTTCGAAAGAATGTCCAATGTGCTAAAATTGCAAGCAGAGGGGAAATTTCAATTAAAAATGAAGCTGATGCAATAGATTCCAACCCTGATCACGATGCTGGATCTGACAGTCCTAGCAGTACTCTTCATGATTTGACTTCTGATAATACATTGGAAACTTCATCATCCTTTAAAATTGAGCTTGGGAAAAGTGAGAGTGAAAGGAAAGCTGCCTTGAGAATGTTTCAAGATTTTCAAAAGTGGATATGGAAAGAAAGCTATAATTCATCAACATTATGTGCAATGAAATATGGGAAAAAGAGATGCAAACCACTGGTGGACATCTGCGATATGTGTTTGAACCCTTATTTCTTTGAAGACTCCCATTGCAATTCTTGCCACCGTACATTTCCTGCTGATAATGGATTTAATTTTTCTAAACATGCATTTCAATGTGGAGAGAAGTTAGACTCCAAAGTTAATTGTGTTTTGGATTCTTCTCTTCCCTTGCGAACAAGATTGCTGAAGGCCCTGTTGGCTTATATTGAGGTGTGTGTTCCTCTTGAAGCATTTCGATCAATTTGGACTGAAGAGATTAGGAAGCAGTTGGGGGTGAAGTTGAGCAAATCATCTTCGATTGATGAACTTTTGAAGATATTGACCTTGTTTGAGAGAGCATTACAGCGAGACTTTCTGTCATCAAACTTCTCTACAACAGAGGAAATGTTGGGATCAAGCAGTATGCCAGAGAGTGCTATAAATGCTTTTACTGATCCTGAATCAGTTCTTGTGCTTCCATGGGTACCACAAACCACTGCAGCTGTGTCTCTCAGACTTTTTGAGTTTGATGCATCCATCAGTTACATACAGCTTGAGAAACCTGAACCTTGTGAGGAGAAAGAAGTGGGGGAATACATAAAGCTTCCTTCAAGATATGCTCCCTTAAAATCTGGTAGAGTTATTGAACCAGCAGAATTAGGCCATGACGAATTTATTAAAGAAGATAAGTCTGCTCATAATAAAATTGTTCGAAGCAGCAATAAACGCGGACGAGGGTCTCATGATCAAGGACGGGGTAAAAAGTTGTCCAGAAGAACATACGAATCCAAACAATATTCTGGGCGGCGCAGTGTTAAGGGTAATGAGAATTTAAGTCAAGGATTAAAACAGCAGGGACGAGGGTCACAAGGACAACCTGGTGGACGTGGCCGCCGAACAGTCAGGAAACGGAGAGTGGAAAAGAGGGCTGTTGAGGATTTGTTGCTAGGACATGCAGGTGTCGCTCATAGTCCCAAGATGGGTAGTGAATCATTGAGAAGTTTGGATGAGGAGTGGGAAGGTGAAAAGGTGAGTCCTGTCCACATGGAGGGTGCTGATAATAGTAACAGTGTTGAAGAAGTGGAATCTGATGATAACGCCCAAGCTGTGGAATATGAGCAAGGAAACTGGGAGGTAGGTTTTAATGGTACCTCCACCAACAGATGGAGTAGTTTTTTAGTTGGAATTAGTGATGAAGACGTGGGTGCTTCTGAAGATGACAATGGCATAGAAGAGGTAGAAGAGGAGGATTCTGAGGCAGATGTTATGAGTGAGGGTTCAGATGGTATGGAAAATAGGATTGTAAATGAAGGCGGCTCGGACTCAGCTGTCTCCGAAGATTCTTCTGAGTAA 5292 0.428 MIPTGPPWGSSDLDRVSSMEAEAASEGENNQKRDATDDYNDHNNGSSSKIANSNEGQSKPKRQMKTPFQLEALEKAYALETYPSEAMRAELSEKLGLSDRQLQMWFCHRRLKDKKELPPKKSRKTVAPLPDSPTDELRMGPELGNDYGSGSGSGSSPFSRSELRNVVPRGVPGYYESQQSIIELRAIACVEAQLGEPLRDDGPILGVEFDPLPPDAFGAPIAVTEQQKRPNLGFDGKVYERHDVRSNKTMARAFHEYPFLSNQSSIRSDAYGQLTQPHLHDPMDNPSRTPSFVLGNEQLPRIHAAQGHSSRVRLLSQQEKQGISYQSTQDDDGAPQRESYSNINIGINSHFTDRPIVGSENPYALPGVQVFQSDPILRMERKRKSDDSRTAREVEAHEMRIRKELEKQDNLRRKSEERMKKEMERQDRERKKEEERLMRERQREEERTKREQRREIERREKFLMKENLRAEKKRQKEELRKEKEAERRKAALEKATARRIAKESMELIEDEQLELMELAAASKGLSSIIHLDLDTLQNLDTFRVSLSVFPPKSVKLKRPFAIKPWMNSEENVGNVLMVWRFLITFADVLELWPFTLDEFLQAFHDYDSRLLGEIHVALLKLIIKDIEDVARTPSAGLGMNQNGAANPGGGHPEIVEGAYAWGFDIRNWQKHLNQLTWPEIFRQLALAAGFGPQLKKRSMTWSYANDKDEDRSCEDIISTLRNGSAAENAVAKMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDAKLFERIAPSTYRVRAAYRKDPADAEAILSEARKKIQIFENGFLAVEDADDVEREEESESDEVDEDPEVDDLVNLSSASKTLEQYDDMNNCSTNGKENLIHDEELIQNEFDKDLPCFSENGSKDADCPSAVTGQPVAVEDLNAGNLDEDNMEIDESKSGESWVQGLTEGEYSDLSVEERLNALVALVGVANEGNSIRVVLEDRLEAANALKKQMWAEAQIDKIRQKDDTNNKSDFPSLNKVETQYTGPAVEGNQSPMLDININNNEASPSTAENQKVVLGAQSTPLEKPSVVQDLFAGPDNLQTLSAHASKRSRSQLKSYIAHIAEEMYVYRSLPLGHDRRRNRYWQFVASTSSNDPGSGRIFVELHDGNWKLIDSEEAFDALLTSLDTRGIRESHLRLMLQKIENSFRENVRKNVQCAKIASRGEISIKNEADAIDSNPDHDAGSDSPSSTLHDLTSDNTLETSSSFKIELGKSESERKAALRMFQDFQKWIWKESYNSSTLCAMKYGKKRCKPLVDICDMCLNPYFFEDSHCNSCHRTFPADNGFNFSKHAFQCGEKLDSKVNCVLDSSLPLRTRLLKALLAYIEVCVPLEAFRSIWTEEIRKQLGVKLSKSSSIDELLKILTLFERALQRDFLSSNFSTTEEMLGSSSMPESAINAFTDPESVLVLPWVPQTTAAVSLRLFEFDASISYIQLEKPEPCEEKEVGEYIKLPSRYAPLKSGRVIEPAELGHDEFIKEDKSAHNKIVRSSNKRGRGSHDQGRGKKLSRRTYESKQYSGRRSVKGNENLSQGLKQQGRGSQGQPGGRGRRTVRKRRVEKRAVEDLLLGHAGVAHSPKMGSESLRSLDEEWEGEKVSPVHMEGADNSNSVEEVESDDNAQAVEYEQGNWEVGFNGTSTNRWSSFLVGISDEDVGASEDDNGIEEVEEEDSEADVMSEGSDGMENRIVNEGGSDSAVSEDSSE 1763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2322 1763 Pfam DDT domain 570 625 IPR018501 -
Glsi11g2322 1763 MobiDBLite consensus disorder prediction 41 64 - -
Glsi11g2322 1763 MobiDBLite consensus disorder prediction 1037 1059 - -
Glsi11g2322 1763 MobiDBLite consensus disorder prediction 1538 1579 - -
Glsi11g2322 1763 ProSiteProfiles DDT domain profile. 569 628 IPR018501 -
Glsi11g2322 1763 SMART HOX_1 58 120 IPR001356 GO:0003677
Glsi11g2322 1763 MobiDBLite consensus disorder prediction 1711 1763 - -
Glsi11g2322 1763 MobiDBLite consensus disorder prediction 1235 1262 - -
Glsi11g2322 1763 Pfam HB1, ASXL, restriction endonuclease HTH domain 751 819 IPR007759 GO:0006355
Glsi11g2322 1763 MobiDBLite consensus disorder prediction 1 68 - -
Glsi11g2322 1763 ProSiteProfiles HARE-type HTH domain profile. 751 820 IPR007759 GO:0006355
Glsi11g2322 1763 MobiDBLite consensus disorder prediction 310 344 - -
Glsi11g2322 1763 MobiDBLite consensus disorder prediction 379 453 - -
Glsi11g2322 1763 MobiDBLite consensus disorder prediction 1246 1262 - -
Glsi11g2322 1763 CDD homeodomain 61 116 IPR001356 GO:0003677
Glsi11g2322 1763 Gene3D - 43 117 - -
Glsi11g2322 1763 SMART testlast3 569 628 IPR018501 -
Glsi11g2322 1763 MobiDBLite consensus disorder prediction 1538 1622 - -
Glsi11g2322 1763 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 961 1004 IPR028942 -
Glsi11g2322 1763 MobiDBLite consensus disorder prediction 1643 1660 - -
Glsi11g2322 1763 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Glsi11g2322 1763 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1135 1207 IPR028941 -
Glsi11g2322 1763 MobiDBLite consensus disorder prediction 1634 1678 - -
Glsi11g2322 1763 MobiDBLite consensus disorder prediction 305 344 - -
Glsi11g2322 1763 MobiDBLite consensus disorder prediction 852 870 - -
Glsi11g2322 1763 MobiDBLite consensus disorder prediction 26 40 - -
Glsi11g2322 1763 Pfam Homeodomain 59 115 IPR001356 GO:0003677
Glsi11g2322 1763 MobiDBLite consensus disorder prediction 116 161 - -
Glsi11g2322 1763 SUPERFAMILY Homeodomain-like 44 115 IPR009057 -
Glsi11g2322 1763 Coils Coil 394 496 - -
Glsi11g2322 1763 MobiDBLite consensus disorder prediction 1580 1604 - -
Glsi11g2322 1763 MobiDBLite consensus disorder prediction 1713 1737 - -
Glsi11g2322 1763 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 38 1763 IPR044977 GO:0006357
Glsi11g2322 1763 MobiDBLite consensus disorder prediction 851 870 - -
Glsi11g2322 1763 MobiDBLite consensus disorder prediction 1029 1059 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2322 Glsi-ChrGlsi11 16293928 16304778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2322 22 1695 Homeobox Transcription Factor Family AT1G28420 50.202 0.0 1391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Glsi11g2322 WSD 8.9e-15 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g2322 11 16293928 16304778 Glsi11g2322 11 16293928 16304778 CCT
Glsi11g2322 11 16293928 16304778 Glsi11g2322 11 16293928 16304778 ECH