Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2319 ATGCTTCCCCTGCTCCTCCTCCTGTGCTTTCTGTTCCCACCTTCCGCTATTCTGTCTTTGAACCACGACGGTCTCCTCCTCTACCAATTCAAGCTCTCTATGAATGACCCAGACTCCTCTCTTTCCTCCTGGAACGACCTTGACACCCATCCCTGCAACTGGGCAGGTGTCACCTGCGACCCAACAAATAGCTCCGTTACCGAACTCGACCTCTCCAATGCCAACATCGCCGGTCCATTCCCTACTTCCATTCTCTGCCGCCTCGCCAACCTCACCTCCATTACACTCTTCAACAACTCTATTAACGATACCCTCCCTTTGGATATCTCACTCTGTCTCAGACTCGTTTACGTTGACCTCTCCCAGAACCTCCTCACCGGTGCTCTTCCCCATACCTTATCCGACCTTTCCAACCTCCAACACCTCGACTTAACCGGCAACAACTTCTCCGGTCCGATACCCCATTCCTTTGGTCGCTTTCAGAAGCTTGAGGTTATCTCTCTGGTGTACAACCTTCTAGATGGAACAATACCCGCCTCTCTCGGAAACATTACAACCCTCAAGATGCTCAACCTTTCTTACAACCCGTTTTCCCCGGGTCAGATCCCGCCGGAACTCGGGAACCTCACTAATCTCGAGGTCATGTGGCTCACCCAGTGTAACTTGGTCGGCATGATTCCTGACACGCTCGGGAGGCTCAAGAAGCTGAGAGACTTAGACCTGGCATTGAACAACCTCTACGGCTCGATTCCCAGTTCTTTAACTGAGATGACTGGCCTGAAGCAGATTGAGCTATATAGCAACTCATTGTCCGGAGAGTTACCTCGGGGAATGGGAAAACTCACTGCATTGAGGCTACTCGATGTGTCGATGAACCATTTGACAGGGAGGATTCCGGACGACTTGTGTCGGCTGCCGCTCGAGAGCCTTAACCTTTACCAGAACCGGTTTGAGGGTGGTTTACCGGAGAGCATAGGCAACTCGCCAAATCTCTATGAACTCAGGTTGTTTGGTAACAGACTCACCGGGAAACTGCCTAGTAATCTTGGAAAGAACGCTCCTTTAAGGTGGCTTGACGTTTCGAGCAACCAGTTCTGGGGCGAAATTCCGGCGACTCTCTGTGCTAACGGGAAATTGGAGGAGCTTCTGATGATATACAACTTGTTTTCCGGAGAGATCCCGGCGAGTTTGGGCAGTTGTCGGAGTTTGATGCGGGTCCGGCTCGGTTTCAACCGGCTTTCCGGCGAAGTCCCGGCGGCTATTTGGGGTCTTCCGCACGTATATCTTCTTGAGCTCATTGATAACTCGCTTTCTGGTTCAATCGCTAAAACTATTGCTGGGGCGAGGAACCTATCCTTGTTGATGCTGTCGAAGAACAATTTCACAGGACCGATCCCTGATGAGGTTGGATGGCTTGAAAATCTTGAGCAATTCTCTGGTGATGATAACATGTTTAATGGGGCACTGCCTGAAAGCATAGTGAATCTTGGGCAGCTCGGGACTCTTGATCTTCATAACAATAATCTCTCCGGCGAGCTTCCAAAGGGAATTCGATCTTGGAAGAAACTCAATGAGTTGAATTTGGCAAATAATGAGATCAGTGGAAAAATTCCTGACGAAATTGGGAGCTTGTCCGTGTTAAATTTTCTTGATCTTTCGCATAATCAGTTTTCCGGGAAAGTTCCTCTTGAGTTGCAGAATCTGAAGCTCAATAGGTTGAATTTGTCTTATAATCAACTCTCTGGAGAACTTCCTCCTTTGTTGGCTAAGGATATGTACATGACTAGTTTTCTGGGTAATCCTGGTTTATGTGGAGATTGGAAAGGTTTATGTGATGGCAGAGATGAAGATAAGGGTGCAGGTTATGCTTGGTTGCTTCGAACCATTTTCATAGTTGCCACTTTTGTGTTGGTTGTCGGCGTGGTCTGGTTCTACTTCAAGTATAGGAACTTTAAAATGGCAAAAAGAGCTATTGACAAATCAAAATGGACGTTGATGTCGTTTCATAAACTGGGTTTTGGTGAAGATGAGATTTTGAACTGTCTTGATGATGATAATGTCATAGGAAGTGGATCATCAGGGAAAGTTTATAAAGTCGTACTTACCAACGGGGAAGCCGTTGCAGTGAAGAAGCTATGGGGAGGCGTCAAAAAGGATATGGAGAGCGGGGATATTGAAAAAGGTCAGGTTCAAGACAGTGCTTTTGATGCAGAAGTTGAAACTTTGGGCAAAATCAGGCACAAGAACATTGTCAAGCTTTGGTGTTGCTGCACCACCAGGGACTGTAAACTCTTGGTTTATGAGTACATGCCAAATGGTAGTCTTGGTGATTTGTTGCATAGCAGTAAAGGAGGGTTGTTGGATTGGCCAACGAGGTATAAGATAGCTGTGGATGCTGCAGAAGGCCTCTCTTATCTGCATCATGATTGTGTTCCCCCAATTGTTCATAGAGATGTGAAATCCAACAATATCCTGTTAGATGGCGACTTTGGTGCAAGAGTGGCCGATTTTGGAGTAGCTAAGGCTGTGGAAACCACCGGAAGAGGAACTAAATCCATGTCTGTCATCGCTGGCTCTTGTGGATACATTGCCCCAGAATACGCATACACGCTGAGAGTGAATGAGAAGAGCGACATATACAGTTTTGGTGTTGTCATTCTTGAGTTGGTCACTGGAAGACGGCCAGTGGACCCAGACTTTGGAGAAAAGGACTTGGTTAAGTGGGTATGCACCACCTTGGACCAGAAAGGGGTGGACCATGTGCTTGATTCCAGACTTGATTCTTGTCACAAGGAAGAAATTTGCAAGGTCCTCAACATTGGCCTCATGTGCACCAGTCCCCTTCCCATCAACCGCCCTGCAATGAGAAGAGTGGTAAAGATGTTGCAAGAGATGGGCACTGATAACCAAACGAAACCCTTCAAGAAAGACGGAAAATTGTCGCCCTATTATTGTGATGATGCCTCAGATCATGGAAGTGTAGCATAG 2988 0.4726 MLPLLLLLCFLFPPSAILSLNHDGLLLYQFKLSMNDPDSSLSSWNDLDTHPCNWAGVTCDPTNSSVTELDLSNANIAGPFPTSILCRLANLTSITLFNNSINDTLPLDISLCLRLVYVDLSQNLLTGALPHTLSDLSNLQHLDLTGNNFSGPIPHSFGRFQKLEVISLVYNLLDGTIPASLGNITTLKMLNLSYNPFSPGQIPPELGNLTNLEVMWLTQCNLVGMIPDTLGRLKKLRDLDLALNNLYGSIPSSLTEMTGLKQIELYSNSLSGELPRGMGKLTALRLLDVSMNHLTGRIPDDLCRLPLESLNLYQNRFEGGLPESIGNSPNLYELRLFGNRLTGKLPSNLGKNAPLRWLDVSSNQFWGEIPATLCANGKLEELLMIYNLFSGEIPASLGSCRSLMRVRLGFNRLSGEVPAAIWGLPHVYLLELIDNSLSGSIAKTIAGARNLSLLMLSKNNFTGPIPDEVGWLENLEQFSGDDNMFNGALPESIVNLGQLGTLDLHNNNLSGELPKGIRSWKKLNELNLANNEISGKIPDEIGSLSVLNFLDLSHNQFSGKVPLELQNLKLNRLNLSYNQLSGELPPLLAKDMYMTSFLGNPGLCGDWKGLCDGRDEDKGAGYAWLLRTIFIVATFVLVVGVVWFYFKYRNFKMAKRAIDKSKWTLMSFHKLGFGEDEILNCLDDDNVIGSGSSGKVYKVVLTNGEAVAVKKLWGGVKKDMESGDIEKGQVQDSAFDAEVETLGKIRHKNIVKLWCCCTTRDCKLLVYEYMPNGSLGDLLHSSKGGLLDWPTRYKIAVDAAEGLSYLHHDCVPPIVHRDVKSNNILLDGDFGARVADFGVAKAVETTGRGTKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRRPVDPDFGEKDLVKWVCTTLDQKGVDHVLDSRLDSCHKEEICKVLNIGLMCTSPLPINRPAMRRVVKMLQEMGTDNQTKPFKKDGKLSPYYCDDASDHGSVA 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2319 995 FunFam Receptor-like protein kinase HSL1 306 613 - -
Glsi11g2319 995 FunFam Leucine-rich receptor-like protein kinase family protein 202 300 - -
Glsi11g2319 995 Pfam Leucine rich repeat 499 557 IPR001611 GO:0005515
Glsi11g2319 995 Pfam Protein kinase domain 685 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g2319 995 SMART LRR_typ_2 88 112 IPR003591 -
Glsi11g2319 995 SMART LRR_typ_2 136 159 IPR003591 -
Glsi11g2319 995 SMART LRR_typ_2 233 257 IPR003591 -
Glsi11g2319 995 SMART LRR_typ_2 281 305 IPR003591 -
Glsi11g2319 995 SMART LRR_typ_2 496 520 IPR003591 -
Glsi11g2319 995 Pfam Leucine rich repeat N-terminal domain 21 60 IPR013210 -
Glsi11g2319 995 Gene3D Phosphorylase Kinase; domain 1 666 769 - -
Glsi11g2319 995 ProSiteProfiles Leucine-rich repeat profile. 522 544 IPR001611 GO:0005515
Glsi11g2319 995 ProSitePatterns Protein kinases ATP-binding region signature. 688 711 IPR017441 GO:0005524
Glsi11g2319 995 ProSiteProfiles Protein kinase domain profile. 682 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g2319 995 SUPERFAMILY Protein kinase-like (PK-like) 678 963 IPR011009 -
Glsi11g2319 995 Gene3D Transferase(Phosphotransferase) domain 1 770 985 - -
Glsi11g2319 995 SUPERFAMILY L domain-like 355 604 - -
Glsi11g2319 995 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 378 963 - -
Glsi11g2319 995 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 770 979 - -
Glsi11g2319 995 Pfam Leucine Rich Repeat 138 158 IPR001611 GO:0005515
Glsi11g2319 995 Pfam Leucine Rich repeat 566 583 IPR001611 GO:0005515
Glsi11g2319 995 ProSitePatterns Serine/Threonine protein kinases active-site signature. 814 826 IPR008271 GO:0004672|GO:0006468
Glsi11g2319 995 Gene3D Ribonuclease Inhibitor 259 328 IPR032675 -
Glsi11g2319 995 Gene3D Ribonuclease Inhibitor 185 258 IPR032675 -
Glsi11g2319 995 SUPERFAMILY RNI-like 68 414 - -
Glsi11g2319 995 Gene3D Ribonuclease Inhibitor 329 612 IPR032675 -
Glsi11g2319 995 FunFam Receptor-like protein kinase HSL1 666 769 - -
Glsi11g2319 995 SMART serkin_6 682 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g2319 995 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 20 184 - -
Glsi11g2319 995 Gene3D Ribonuclease Inhibitor 20 180 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2319 Glsi-ChrGlsi11 16269435 16272804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2319 16 995 Receptor kinase-like Gene Family AT1G28440 71.125 0.0 1441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi11g2319 Pkinase 9.7e-42 CL0016