Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2317 ATGACATGGTGCAATGACTCCGAAGATGATAGGGGTATAGAAATAATCACCCCCACCTTTACTCCCAGAGCTAACGCTGCTGTTACTGACACAAAATCCACAGAAAATCGAACCATAACTTGCCCTTCATGCGGCCACAACGTAGAATTTCAAGATCAGGGTGGAATTCATGAGTTGCCGGGGCTACCAGCTGGGGTGAAGTTTGATCCGAATGACCAAGAAATATTGGAGCATTTAGAGGCAAAGGTGCTGTCTGATGTGCGTAAACTTCATCCTCTTATTGACGAGTTCATCCCAACTCTTGAAGGCGAGAATGGGATCTGTTATACACACCCAGAAAAGCTACCAGGAGTGAGCAAAGATGGACAGATTCGCCACTTCTTTCACAGACCTTCAAAAGCGTACACAACCGGGACAAGGAAAAGAAGAAAGGTTCACACAGATGAAGAAGGAAGCGAGACGAGATGGCACAAAACAGGCAAAACCAGAGCAGTATTTGTTGGTGGTGCAGTGAAGGGTTTCAAAAAGATACTAGTTCTCTACACTAACTATGGCAGGCAAAGGAAGCCTGAGAAGACCAGCTGGGTGATGCATCAGTACCATCTTGGCAGTAATGAAGAAGAGAAAGAAGGAGAATTAGTGGTTTCAAAGGTTTTTTACCAAACACAACCTAGACAATGTGGTTCGATTGTTAAGGATCCTTACGAGAAAAGATTGAATAACCAAACGGGGCATCATGATCATGATAGCAGTACAATACCTAAAAATGCAGGTCTTTTAGACTATTACAGTTCTCCTTACCTAAATTATGAACATGTGGGTCATAATAGAGAGAGCTCACCTCAGCTTATTCCAAACTTGGTTGTCCAAGGTGATGCCTCTTCTTTCTTTTCCTTTAGCAATGGATGCAGGCAAAGCAAGACTTGA 927 0.4337 MTWCNDSEDDRGIEIITPTFTPRANAAVTDTKSTENRTITCPSCGHNVEFQDQGGIHELPGLPAGVKFDPNDQEILEHLEAKVLSDVRKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEEGSETRWHKTGKTRAVFVGGAVKGFKKILVLYTNYGRQRKPEKTSWVMHQYHLGSNEEEKEGELVVSKVFYQTQPRQCGSIVKDPYEKRLNNQTGHHDHDSSTIPKNAGLLDYYSSPYLNYEHVGHNRESSPQLIPNLVVQGDASSFFSFSNGCRQSKT 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2317 308 ProSiteProfiles NAC domain profile. 62 221 IPR003441 GO:0003677|GO:0006355
Glsi11g2317 308 Pfam No apical meristem (NAM) protein 63 202 IPR003441 GO:0003677|GO:0006355
Glsi11g2317 308 Gene3D NAC domain 71 225 IPR036093 GO:0003677|GO:0006355
Glsi11g2317 308 FunFam NAC domain-containing protein 73 71 225 - -
Glsi11g2317 308 MobiDBLite consensus disorder prediction 141 156 - -
Glsi11g2317 308 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 30 248 IPR044799 GO:0003700
Glsi11g2317 308 MobiDBLite consensus disorder prediction 135 156 - -
Glsi11g2317 308 SUPERFAMILY NAC domain 57 221 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2317 Glsi-ChrGlsi11 16257835 16259489 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2317 1 231 NAC Transcription Factor Family AT4G28500 72.458 6.50e-124 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi11g2317 NAM 2.1e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g2317 11 16257835 16259489 Glsi11g2317 11 16257835 16259489 ECH