Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2313 ATGATGGGTTTGATCGATCTTAACACTACTGAGGACGACGAAACTCCATCGTCGGGTTCCTCTGCTTCTTTGTCCTCTCATTCGGGTATAAGCACTTCGGCTTCGGCTTCTCCTTCAACTCTGGCCCCTTCTTCCTCCGTGTGCTTGGAGCTATGGCACGCGTGTGCGGGCCCAATGATCTCGTTGCCGAAGAAAGGAAGCGTGGTGGTGTACTCCCCACAGGGCCACTTTGAGCAGCAGGTTCAGGATTTCCCGGTCGCTGCCTGTAATATCCCACCCCATGTCTTCTGTCGCGTTGTAGATGTCAAGCTCCATGCCGAGGAAGGTATCGATGAAGTGTACTGCCAGGTCTCGTTGCTTCCTGAAAGCGAGCAAGTTGAGAGAAAATTTCGGGAAGGCGAAATTGATGCTGACGATGAAGATGCTGATACTGAAGCTGTGGTGAAGTCAACTACACCTCATATGTTCTGCAAGACTCTGACAGCTTCTGATACTAGCACTCATGGTGGATTCTCTGTTCCTCGTCGAGCTGCTGAAGATTGTTTTCCTCCCCTGGATTATAATCAACAGAGGCCTTCGCAAGAGCTTGTGGCGAAGGATCTGCATGGCCTGGAATGGAAGTTCCGACACATTTACAGGGGTCAGCCACGGAGGCATTTGCTTACCACTGGGTGGAGTGCATTTGTAAACAAGAAGAAGCTTGTGTCTGGAGATGCTGTGCTTTTTCTTAGGGCTGAGGATGGAGAACTGAGATTAGGAATTCGTAGGGCATCTCAGTTGAAAAGTGGCGGTACCTTTTCAGTTCCCTCCAGCCTGCAATTGAATCCCAGCACTCTCATAGATGTGGTGAATGCTATATGTACAAGATGTGCCTTTAGCGTTTGCTATAATCCTAGGGTCAGATCATCAGAATTCATAATACCCCTCCACAAATTCTTAAAGAGCATTGATCATTTCTATCCAGTTGGGATGAGGTTCAGAATGCGTTTTGAAACTGAAGATGCTGCAGAGAGAAGATGCACAGGATTGATTATTGGAATTAGCGATGTGGACCCTGTTAGGTGGCCTGGATCAAAATGGAAATGCCTTGTGGTGAGGTGGGATGACATAGACGCCACTAGGCATAACAGGGTTTCCCCATGGGAAATTGAGGCATCTGGTTCTGCTTCGACTTCCAATAACTTCAATGCAACTGGTTTGAAGAGGACCAGGATTGGTTTGCCTTCTACCAAGCTAGAATTTCCAGTTCCCAGTGGGATTGGAACATCAGACTTCGGGGAATCGTTAAGGTTCCAGCAGGTCTTGCAAGGTCAAGAAATTTTAGGTGTTAATACTCATTTTGATGGTATTAGTCCTCAGAGTCACCAGTTAACTGAAATAAGGAGATGCTATCCTGGTTCAAGCTATTCTGGGATTTCTTCAACAGGAAATCGTATCAGAATCCCACAAATGAATTCTGATGTTTCCTGCAATGGCATGGGCTTCAGTGAATCTTTCCGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCAAGCCAACCATTCGGAGGAGGCTTGTCTGTTGGCGAGGCTCGTGGAAATGGTCGCTATGGAATTTTTGATAGGGTTCAATTGCTGAGCTCCAGAAATGGATGGTCTGCCCAAATGCAGGACAATTCTGCATATTTGCATCCGCATCCATCTGCACAAGTGTCATCTCCATCATCTGTGTTAATGTTCCAGCAAGTAGTGAAACCAGTTTCAAACTATGATTACAACAACAAAAATTATCGGGAGATGGAGGATAAAATCCAATATCAAGGGTCACATGCTTCTGAAATTAAGGGTGGAAAATTTGCATCAGCCTCTTCCTATGAGCCTATTTTCTGTGGACAGTTTCAAGGAGAAACAAACACTTTTGATATGCTAGGACATAATCAATTGGATTCTTCTCTTCCAGGTGATACTCTGTCGCACCTAGGAGGTAGTAAAGAGTTGGTCTCCTCTTGTAAAAATAGCTGCAGACTTTTTGGTTTTTCGTTGACTCAAGAAAATCACATTGCTGCAACAAATGAGGCTCACCCCTCTACACTCCCTGGTCATTCAAGTTCAGGAGATGAGTACCATCCAGGTCATTCCCTCAGGAACAAAGTGGTTGGAGGCAATTGTACCAAAGTAAGCTAG 2166 0.4575 MMGLIDLNTTEDDETPSSGSSASLSSHSGISTSASASPSTLAPSSSVCLELWHACAGPMISLPKKGSVVVYSPQGHFEQQVQDFPVAACNIPPHVFCRVVDVKLHAEEGIDEVYCQVSLLPESEQVERKFREGEIDADDEDADTEAVVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLHGLEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRAEDGELRLGIRRASQLKSGGTFSVPSSLQLNPSTLIDVVNAICTRCAFSVCYNPRVRSSEFIIPLHKFLKSIDHFYPVGMRFRMRFETEDAAERRCTGLIIGISDVDPVRWPGSKWKCLVVRWDDIDATRHNRVSPWEIEASGSASTSNNFNATGLKRTRIGLPSTKLEFPVPSGIGTSDFGESLRFQQVLQGQEILGVNTHFDGISPQSHQLTEIRRCYPGSSYSGISSTGNRIRIPQMNSDVSCNGMGFSESFRFQKVLQGQEILPSQPFGGGLSVGEARGNGRYGIFDRVQLLSSRNGWSAQMQDNSAYLHPHPSAQVSSPSSVLMFQQVVKPVSNYDYNNKNYREMEDKIQYQGSHASEIKGGKFASASSYEPIFCGQFQGETNTFDMLGHNQLDSSLPGDTLSHLGGSKELVSSCKNSCRLFGFSLTQENHIAATNEAHPSTLPGHSSSGDEYHPGHSLRNKVVGGNCTKVS 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2313 721 SMART B3_2 156 258 IPR003340 GO:0003677
Glsi11g2313 721 SUPERFAMILY DNA-binding pseudobarrel domain 149 265 IPR015300 -
Glsi11g2313 721 MobiDBLite consensus disorder prediction 688 721 - -
Glsi11g2313 721 FunFam Auxin response factor 154 258 - -
Glsi11g2313 721 Pfam B3 DNA binding domain 156 257 IPR003340 GO:0003677
Glsi11g2313 721 CDD B3_DNA 154 256 IPR003340 GO:0003677
Glsi11g2313 721 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 46 687 IPR044835 GO:0003677|GO:0006355|GO:0009725
Glsi11g2313 721 ProSiteProfiles B3 DNA-binding domain profile. 156 258 IPR003340 GO:0003677
Glsi11g2313 721 MobiDBLite consensus disorder prediction 10 36 - -
Glsi11g2313 721 Gene3D - 154 258 IPR015300 -
Glsi11g2313 721 Pfam Auxin response factor 283 363 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Glsi11g2313 721 MobiDBLite consensus disorder prediction 1 36 - -
Glsi11g2313 721 FunFam Auxin response factor 320 390 - -
Glsi11g2313 721 Gene3D - 320 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2313 Glsi-ChrGlsi11 16198092 16203315 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2313 155 557 B3 DNA Binding Superfamily AT2G33860 55.147 5.62e-142 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Glsi11g2313 B3 2e-22 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g2313 11 16198092 16203315 Glsi11g2313 11 16198092 16203315 ECH