Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi11g2307 | ATGGCTCGTACCAAGCAAACCGCTCGCAAATCCACCGGAGGCAAGGCTCCGAGGAAGCAACTGGCTACTAAGGCTGCTCGGAAGTCCGCTCCAGCCACCGGCGGCGTGAAGAAGCCTCATCGTTTCAGGCCCGGTACTGTGGCTCTTCGTGAGATCAGAAAGTACCAGAAGAGTACCGAGCTTTTGATCAGGAAACTCCCTTTCCAACGTCTGGTTCGTGAGATAGCTCAGGATTTTAAGACTGATCTCCGTTTCCAGAGCTCCGCCGTGGCTGCTCTTCAGGAAGCAGCTGAGGCTTATTTGGTTGGACTCTTCGAGGATACTAACCTTTGTGCAATTCATGCTAAAAGGGTCACCATTATGCCTAAGGATATACAGCTTGCGAGACGTATTAGGGACATCATCTACATCCACGGCCAATCCATCACTCTTGTAGCTGCTTATGAGGAAGCTGCTGGCGCACAACGGTGGACTCTCGACCCAGCTCTGTCTGGTTCGTTCGTTCAGTTGGGGAAATGGGTTCGTGAGGAGGATCTCACATTCTCACTAGCCGAGACAGCATTTGTGGTTGACTTTTGGGATTTTCTCGATCAAAATCCTGGATATTTGGCAGCCTTCAATGAAGCAATGGCCAGTGATTCTTTGATAATAAACTTACCACTGAGAGAGTTGGAGTCAGTTTTTGAGGGCCTGATGTTTGACCTTCCAGAGGTTGTAGCAATCTTATCTGGAAACAACAATTTGAGTTATGTTGGTGGGGACATGTTTAAATCTATCCCTCTAGCTGATGCGGTTCTGCCAAAGGTATGCATGCACATGAAATCAGCTTTCCTCAGTTGCTCTTCCCAGTTACCATTTCAAATCAAGATGTCAAGGTGA | 879 | 0.4835 | MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRDIIYIHGQSITLVAAYEEAAGAQRWTLDPALSGSFVQLGKWVREEDLTFSLAETAFVVDFWDFLDQNPGYLAAFNEAMASDSLIINLPLRELESVFEGLMFDLPEVVAILSGNNNLSYVGGDMFKSIPLADAVLPKVCMHMKSAFLSCSSQLPFQIKMSR | 292 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi11g2307 | 292 | ProSitePatterns | Histone H3 signature 2. | 67 | 75 | IPR000164 | GO:0000786|GO:0003677|GO:0030527 | |
| Glsi11g2307 | 292 | Gene3D | Vaccinia Virus protein VP39 | 229 | 276 | IPR029063 | - | |
| Glsi11g2307 | 292 | FunFam | Histone H3 | 2 | 50 | - | - | |
| Glsi11g2307 | 292 | PANTHER | HISTONE H3 | 1 | 132 | IPR000164 | GO:0000786|GO:0003677|GO:0030527 | |
| Glsi11g2307 | 292 | FunFam | Histone H3.3 | 53 | 134 | - | - | |
| Glsi11g2307 | 292 | SMART | h35 | 34 | 136 | IPR000164 | GO:0000786|GO:0003677|GO:0030527 | |
| Glsi11g2307 | 292 | Gene3D | Vaccinia Virus protein VP39 | 150 | 228 | IPR029063 | - | |
| Glsi11g2307 | 292 | Gene3D | Histone, subunit A | 2 | 134 | IPR009072 | GO:0046982 | |
| Glsi11g2307 | 292 | Pfam | Core histone H2A/H2B/H3/H4 | 1 | 132 | IPR007125 | GO:0003677 | |
| Glsi11g2307 | 292 | SUPERFAMILY | Histone-fold | 2 | 134 | IPR009072 | GO:0046982 | |
| Glsi11g2307 | 292 | PRINTS | Histone H3 signature | 17 | 31 | IPR000164 | GO:0000786|GO:0003677|GO:0030527 | |
| Glsi11g2307 | 292 | PRINTS | Histone H3 signature | 58 | 75 | IPR000164 | GO:0000786|GO:0003677|GO:0030527 | |
| Glsi11g2307 | 292 | PRINTS | Histone H3 signature | 34 | 55 | IPR000164 | GO:0000786|GO:0003677|GO:0030527 | |
| Glsi11g2307 | 292 | PRINTS | Histone H3 signature | 114 | 135 | IPR000164 | GO:0000786|GO:0003677|GO:0030527 | |
| Glsi11g2307 | 292 | PRINTS | Histone H3 signature | 3 | 17 | IPR000164 | GO:0000786|GO:0003677|GO:0030527 | |
| Glsi11g2307 | 292 | PRINTS | Histone H3 signature | 80 | 98 | IPR000164 | GO:0000786|GO:0003677|GO:0030527 | |
| Glsi11g2307 | 292 | PRINTS | Histone H3 signature | 98 | 114 | IPR000164 | GO:0000786|GO:0003677|GO:0030527 | |
| Glsi11g2307 | 292 | ProSitePatterns | Histone H3 signature 1. | 15 | 21 | IPR000164 | GO:0000786|GO:0003677|GO:0030527 | |
| Glsi11g2307 | 292 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 157 | 273 | IPR029063 | - | |
| Glsi11g2307 | 292 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi11g2307 | Glsi-ChrGlsi11 | 16141330 | 16142741 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi11g2307 | 221 | 290 | Monolignol Biosynthesis Gene Families | AT3G53140 | 38.158 | 2.56e-08 | 52.8 |