Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g2293 ATGGTTTTAGCCTCCCAGACAGAGCTGCCGTTTAACGAGAACGACTCACAAGACATGGTCATATACCAAGTCCTCAACGAGGCCTATGCTCTCCCCACCACCACCGCCGCCACCGCCACATTCATGCTGCCGCAGAATCACTACAACCCCCACCATCAAAGCCGCCACCAAAACGGCGCAGAGAATGGTCTGGAGCCTACCAAGAACATCAGCAAGAAGCACTACAGAGGCGTGAGGCGGCGGCCGTGGGGGAAATACGCGGCGGAGATCAGGGACTCTGCACGGCAAGGAGCCCGGGTGTGGCTTGGCACGTTTGAGACTGCAGAAGCTGCCGCCTTGGCTTATGACAGAGCTGCTTTTAAAATGAGAGGCGCTAAGGCTCTGCTCAATTTCCCAGCTGAAGTTGTAGCTGCGTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCGTCTAAGGCTGATTTGAGCTCAGGGAGCTTCAATAATCAGGATTCGGATTTGAGTTTAAGTTCCATTGGGACATGTAGCACAGACAGTTAG 537 0.5345 MVLASQTELPFNENDSQDMVIYQVLNEAYALPTTTAATATFMLPQNHYNPHHQSRHQNGAENGLEPTKNISKKHYRGVRRRPWGKYAAEIRDSARQGARVWLGTFETAEAAALAYDRAAFKMRGAKALLNFPAEVVAASSSSSSSSSSSSKADLSSGSFNNQDSDLSLSSIGTCSTDS 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g2293 178 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Glsi11g2293 178 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
Glsi11g2293 178 CDD AP2 73 133 IPR001471 GO:0003700|GO:0006355
Glsi11g2293 178 ProSiteProfiles AP2/ERF domain profile. 74 132 IPR001471 GO:0003700|GO:0006355
Glsi11g2293 178 Gene3D AP2/ERF domain 73 134 IPR036955 GO:0003700|GO:0006355
Glsi11g2293 178 MobiDBLite consensus disorder prediction 139 178 - -
Glsi11g2293 178 SMART rav1_2 74 138 IPR001471 GO:0003700|GO:0006355
Glsi11g2293 178 SUPERFAMILY DNA-binding domain 74 134 IPR016177 GO:0003677
Glsi11g2293 178 FunFam Ethylene-responsive transcription factor 2 73 134 - -
Glsi11g2293 178 PANTHER DNA-BINDING DOMAIN 54 156 IPR044808 GO:0003700|GO:0009873
Glsi11g2293 178 Pfam AP2 domain 74 124 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g2293 Glsi-ChrGlsi11 16065779 16066315 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g2293 9 135 AP2-EREBP Transcription Factor Family AT5G47220 51.538 1.59e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi11g2293 AP2 7.4e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g2293 11 16065779 16066315 Glsi11g2293 11 16065779 16066315 ECH